PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013592
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YA
Protein Properties Length: 351aa    MW: 38430.1 Da    PI: 9.538
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013592genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.28.5e-31165220258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   p+YVNaKQy++Il+RR++Rak+e e+kl +++rk+y+h+SRh hA+rRpRgsgGrF
  Lus10013592 165 GPIYVNAKQYHGILRRRKSRAKAEMENKL-SRTRKQYMHHSRHLHAMRRPRGSGGRF 220
                  69***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.9E-34162223IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.309163223IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.1E-23166188IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.5E-27166220IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860168188IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.1E-23197220IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MTMKTLYFKE HEGIAQNPAG QLSSSSTPTT VPWWNVMGSQ PAYVDSQLKA FSIEGGDQVT  60
ATKQTSPTID QGRDGLGKEA PTEFNIFPAS SGNGKSISEG QKAVPAQSFF PLQATMAAPY  120
DLGFGQQMVC AKYPPMDQYY GIFSAYGPQI PGRIMLPMDM STDEGPIYVN AKQYHGILRR  180
RKSRAKAEME NKLSRTRKQY MHHSRHLHAM RRPRGSGGRF LTKMEIDKMT REGHNFHLSQ  240
PTGSQSSGGG GLLQSDSGGS ANSSKEANGY GGGRMNHNHN HHHHHNRSGS EVTSLFSRDE  300
EDMGGCFQIK NLMPPFHSFP GMMNTGHDIV MPNSKWVAAA VDNCSSNLKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18164227265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013592
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021688502.11e-106nuclear transcription factor Y subunit A-10-like
RefseqXP_021688503.11e-106nuclear transcription factor Y subunit A-10-like
RefseqXP_021688506.11e-106nuclear transcription factor Y subunit A-10-like
TrEMBLA0A1Q3B7W71e-104A0A1Q3B7W7_CEPFO; CBFB_NFYA domain-containing protein
STRINGLus100135920.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-51nuclear factor Y, subunit A10