PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013762
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 271aa    MW: 30525.2 Da    PI: 6.8918
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013762genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-152168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde+l  ++++ G g+W+t +++ g+ R++k+c++rw +yl
      Lus10013762 21 RGPWTAEEDEILSGYINREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 68
                     89******************************99************97 PP
2Myb_DNA-binding51.72e-1674119148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg  T++E++l+++ +++lG++ W++Iar+++ gRt++++k++w+++l
      Lus10013762  74 RGHITADEEDLILRMHRLLGNR-WSLIARRIP-GRTDNEIKNYWNTHL 119
                      6778******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3461868IPR017930Myb domain
SuperFamilySSF466898.8E-2819115IPR009057Homeodomain-like
SMARTSM007178.1E-112070IPR001005SANT/Myb domain
PfamPF002492.3E-132168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-212275IPR009057Homeodomain-like
CDDcd001675.01E-82368No hitNo description
PROSITE profilePS5129425.4669123IPR017930Myb domain
SMARTSM007174.9E-1673121IPR001005SANT/Myb domain
PfamPF002491.1E-1474119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2476124IPR009057Homeodomain-like
CDDcd001676.57E-1278119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MRNPASSEQR TAAAKVGAIK RGPWTAEEDE ILSGYINREG EGRWRTLPKR AGLLRCGKSC  60
RLRWMNYLRP SVKRGHITAD EEDLILRMHR LLGNRWSLIA RRIPGRTDNE IKNYWNTHLS  120
KKLISQGIDP TTHKPYIPSM INKPPPSTSA KSSSSSLLLP PEPPSLRSKR FITYEHQQQQ  180
AGEDAVLAHT IRNDIVVERG EDDDEDYDHV GTARDMMMAN NNVDQVLKRE EEEEDAAFSS  240
FLNSLINEEG DVYITNSTSA SSASPNPIDM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25211237108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013762
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434848.18e-86PREDICTED: transcription repressor MYB5-like
SwissprotQ388504e-79MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A0D2SPS82e-84A0A0D2SPS8_GOSRA; Uncharacterized protein
STRINGLus100137620.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-77myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]