PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013764
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 321aa    MW: 35584.7 Da    PI: 9.3668
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013764genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.7e-191868155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+y GVr+++ +g+WvAeI+d +   ++ r +lg+f+tae+Aa+a+++a++ l+g
  Lus10013764 18 SKYIGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFDTAEDAARAYDEAARLLRG 68
                 79********.7*********32...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.98E-321878No hitNo description
SuperFamilySSF541717.19E-211878IPR016177DNA-binding domain
PfamPF008471.0E-121868IPR001471AP2/ERF domain
SMARTSM003803.7E-361982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-291977IPR001471AP2/ERF domain
PROSITE profilePS5103220.0331976IPR001471AP2/ERF domain
PRINTSPR003672.6E-82031IPR001471AP2/ERF domain
PRINTSPR003672.6E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MATKLKVVGR KNTMSTKSKY IGVRQRPSGK WVAEIKDTTQ KIRMWLGTFD TAEDAARAYD  60
EAARLLRGSN TRTNFNLSNH NHSNVLFPYS QISTKIRNLL HRRRANINKP NSIAIPVPPS  120
ICLPTKTQFL NFQTHNTIGT SSSFSTRNTI GTSNSTYSTS NTISTSTSIS NSPSSPSSPA  180
FSVPQERNFE VFGDAYKPDV QSISNPPFQF LPSGFSFQDE ELSSMQHQQQ EVDVRLVSSA  240
CGEEHGELPK FERMKVERQI SASIYAMNGL NECIMQQQYH HPTGFGGGGG DHHGSNLWDF  300
PALCSVLSDS FSFPNDLFKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-152077361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013764
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100137640.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-26related to AP2 11