PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013809
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 142aa    MW: 16367.7 Da    PI: 10.7127
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013809genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.2e-095096447
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                     WTt E   l+++v+q+G g+W+ I +      ++Rt+ +++++w+++
      Lus10013809 50 WTTAEVSNLIEGVAQYGIGRWTDIKKFHFsssTHRTPIDIRDKWRNL 96
                     ************************9965569**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-1440107IPR009057Homeodomain-like
PROSITE profilePS5129414.14242101IPR017930Myb domain
SMARTSM007179.4E-74699IPR001005SANT/Myb domain
CDDcd116602.34E-184898No hitNo description
PfamPF139213.4E-1050113No hitNo description
SuperFamilySSF466892.83E-1750111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MAFSYSPCLL SLLTLQDLKP DDLYTSSESE DGRKNKTLGC KNRRKHHVMW TTAEVSNLIE  60
GVAQYGIGRW TDIKKFHFSS STHRTPIDIR DKWRNLVKSS RNQKRWNQGV DQRQPSRLVL  120
SEAQMGRVVE LATIHVRNNK K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013809
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018806257.17e-31PREDICTED: uncharacterized protein LOC108979921 isoform X2
TrEMBLA0A2I4DGI82e-29A0A2I4DGI8_JUGRE; uncharacterized protein LOC108979921 isoform X2
STRINGLus100138091e-102(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-21TRF-like 6