PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10013816
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 749aa    MW: 82529.7 Da    PI: 7.8478
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10013816genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-094991347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e++  a +q+G++ +++I ++++  +   q++++++ +
      Lus10013816 49 AWTRQEEERFFTALRQFGKN-FEKITNRVQ-SKNKDQVRHYYYRL 91
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.09E-113996IPR009057Homeodomain-like
PROSITE profilePS5129314.6424596IPR017884SANT domain
SMARTSM007171.4E-74694IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-64894IPR009057Homeodomain-like
PfamPF002492.2E-74991IPR001005SANT/Myb domain
CDDcd001673.28E-74992No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MEPLVSLGSQ ALLHTETAVQ DQSPCVLSST PDHVEPQLPV KKKTRQWAAW TRQEEERFFT  60
ALRQFGKNFE KITNRVQSKN KDQVRHYYYR LVKRMNKYLG PALCLDAKNS KDTNAAMLRW  120
WSLLEKYSCK ASKLHLKPRR FKIFLEALEN QLIKDRKKNE RKRPLQGESA SPIATSSVTK  180
QNRASAQGAV MVKLVLIDGQ NIQKLGSSKG SLRRNASVGV MRNTNKGSPG LMKPPRQKRK  240
QSAVTPAAYR KWEKAAIAGV SLVADAAEHL ERTAIDKDVN ADQAEGGLDP VDKELVPLPV  300
SSHHQTGDSN VCSNMKLKLQ FFPIDDMTRR ALELDKHNPH LELTLSARKK ISSVFEHLNR  360
KWGNSSVASG DLMLFPYTVN RENLLGSQRW TQDTTASAAD IYNSLGNPPV FRLRYGWFSD  420
SGYQSVLLQA PSISRCTPSG NDIDTNSNKQ KEHSTSASTC FGSQKLVDVS QDQPSLMNKT  480
SDPSSISSNP LPALSCLRTA TDDGTNMKPL EDGLTICMQN TKDELRLSNG TALSAGEWAD  540
SLTNISVGDL LSEVTQNDQC LEPVPFSCDS FDAAIAAHIS KHQNKFGFPP LVQPQTSSIW  600
DADETCDAFS FQKNHISHQQ VSRTSNVTSS TAGKQDFPNL GGQLGYYADG DPMEEEAMDN  660
PSKDFSGLSD VYWPDSLGAL DLDIPSCKYD SEEIVLNDSL GGLNRLIASS LDAFQNCSFL  720
GLEKKDSAST VEARDSTSFS GFKVGSGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10013816
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8854571e-62HQ885457.1 Linum usitatissimum clone Contig1346 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538134.10.0TSL-kinase interacting protein 1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A067K2750.0A0A067K275_JATCU; Uncharacterized protein
STRINGLus100138160.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98832531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1