PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10013950

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

VOZ

Protein Properties

Length: 247aa MW: 27601.3 Da PI: 8.1892

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10013950	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	368.5	2.2e-113	3	190	30	217
VOZ 30 cssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqr 127 cs fh +lalneglpgt pvlrp+gi+lkdgllfaal +k++gkevgipecegaatakspwna+elf+l +legetirewlffdkprrafesgnrkqr Lus10013950 3 CSRFHHDLALNEGLPGTGPVLRPGGIGLKDGLLFAALGSKAEGKEVGIPECEGAATAKSPWNAPELFNLLVLEGETIREWLFFDKPRRAFESGNRKQR 100 9*********************************************************************************************** PP VOZ 128 slpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 slpdysgrgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyei+++da+alyrlelk vd+kks+kgk+s+ds+a+lqk++grlta Lus10013950 101 SLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNNFEWHLYEYEITKCDACALYRLELKAVDGKKSSKGKLSNDSVAHLQKQMGRLTA 190 **************************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MCCSRFHHDL ALNEGLPGTG PVLRPGGIGL KDGLLFAALG SKAEGKEVGI PECEGAATAK 60 SPWNAPELFN LLVLEGETIR EWLFFDKPRR AFESGNRKQR SLPDYSGRGW HESRKQVMNE 120 FGGLKRSYYM DPQPLNNFEW HLYEYEITKC DACALYRLEL KAVDGKKSSK GKLSNDSVAH 180 LQKQMGRLTA EFPTDNKRPA KGRPKMDTKL GNPYPAANRV VPTTEAFEYG LGYNYLGDNI 240 DDYFVT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10013950

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002522505.1	1e-146	transcription factor VOZ1 isoform X1
Refseq	XP_015576892.1	1e-146	transcription factor VOZ1 isoform X2
Swissprot	Q9SGQ0	1e-127	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	B9S936	1e-144	B9S936_RICCO; Uncharacterized protein
STRING	Lus10013950	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1498	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-129	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Lus10013950

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]