PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10013979

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HB-other

Protein Properties

Length: 249aa MW: 27369 Da PI: 5.7528

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10013979	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.9e-19	48	103	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+++ + yps+++r++L+++lgL++rq ++WF+ rR k++k Lus10013979 48 PKRQMKTPFQLETLEKAYSLETYPSEATRTKLSQELGLSDRQLQMWFCHRRLKDRK 103 69****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-19	29	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.98E-18	34	105	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.698	44	104	IPR001356	Homeobox domain
SMART	SM00389	7.0E-18	46	108	IPR001356	Homeobox domain
Pfam	PF00046	7.0E-17	48	103	IPR001356	Homeobox domain
CDD	cd00086	9.35E-17	49	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MDANSGADDH HHHRDRDPDD ESTPGNKNNA ADSSYSSAAA AAAANGKPKR QMKTPFQLET 60 LEKAYSLETY PSEATRTKLS QELGLSDRQL QMWFCHRRLK DRKEDKRDGN GMKKPHGKAS 120 STLMKSSSSP VDDYHQFKAG SDDHHHQVGS DDDSECGSGS SRYVEPSRNN VACFDDGHVP 180 RRYYQSSLML SAMEARAIAC VEAQLEEPLR EDGPVLGIKF DPLPPDAFGA AIGTVFLAEL 240 FSDQFVYG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	103	RRLKDRKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10013979

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018811588.1	6e-55	PREDICTED: homeobox-DDT domain protein RLT1 isoform X1
Swissprot	F4HY56	4e-44	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A2I4DWR4	1e-53	A0A2I4DWR4_JUGRE; homeobox-DDT domain protein RLT1 isoform X1
STRING	Lus10013979	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15781	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	8e-28	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Lus10013979