PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014177
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 302aa    MW: 33581.9 Da    PI: 5.0871
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014177genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.64.7e-22113178159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEE....E-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkve....rsaedpkvveitYegeHnhe 59 
                  +dDgy WrKYGqK++ +sefpr YYrCt++   +C+++k+v+    r + d+ +  +tY g+H+++
  Lus10014177 113 VDDGYGWRKYGQKNIIKSEFPRLYYRCTHKkeqNCQATKQVQmitqRHSPDQLIYRTTYYGRHTCN 178
                  59***************************99999*******733336777999***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-22106178IPR003657WRKY domain
PROSITE profilePS5081117.408108175IPR003657WRKY domain
SuperFamilySSF1182908.5E-22109178IPR003657WRKY domain
SMARTSM007741.8E-32113179IPR003657WRKY domain
PfamPF031067.2E-23114177IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MENQTAIDEL QRGRHFASQL KHLLDSTTDF KSQADGSAED LVARILSTFT HSLSLLTSIN  60
NAGDEEDDSR DRQSSDGRKS EGSSGDGNKR SATRMKQKRT SPESWVKEST NLVDDGYGWR  120
KYGQKNIIKS EFPRLYYRCT HKKEQNCQAT KQVQMITQRH SPDQLIYRTT YYGRHTCNNN  180
GGRQIMLQED ETVDYLAGCQ VISFGKQGGQ LDDHDVMSRS FPLAAMSAVL GGEIDKSGDD  240
VVGSGGQMTG IDDADRQGAN STSSSNDSCS NDSSNDDFMR MMMMTRMESF NDFEMLLGLT  300
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-15113177868OsWRKY45
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014177
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021684239.11e-42probable WRKY transcription factor 70
STRINGLus100141770.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.12e-21ABA overly sensitive mutant 3