PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014271
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 1594aa    MW: 175523 Da    PI: 6.6394
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014271genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-0615691592226
                   -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                   + + C+ f+++G+Ck G++C+F H+
  Lus10014271 1569 GPRVCK-FYENGYCKKGASCSFWHP 1592
                   5689**.6666***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.53E-8115165IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.0E-9116173IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd155681.16E-18120165No hitNo description
SMARTSM002498.6E-7120166IPR001965Zinc finger, PHD-type
PROSITE patternPS013590121181IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475928.72E-19351429IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.102.0E-22352432IPR003121SWIB/MDM2 domain
PfamPF022018.2E-13360428IPR003121SWIB/MDM2 domain
PROSITE profilePS5136025.546494627IPR004343Plus-3 domain
SMARTSM007193.5E-42494604IPR004343Plus-3 domain
SuperFamilySSF1590424.71E-29495624IPR004343Plus-3 domain
PfamPF031264.3E-21499599IPR004343Plus-3 domain
SuperFamilySSF552775.89E-16720786IPR003169GYF domain
CDDcd000721.80E-14734791No hitNo description
PROSITE profilePS5082914.653734788IPR003169GYF domain
SMARTSM004441.6E-12735790IPR003169GYF domain
Gene3DG3DSA:3.30.1490.403.3E-16736787IPR003169GYF domain
PfamPF022131.3E-8737780IPR003169GYF domain
PROSITE profilePS5010314.28615671593IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-615681592IPR000571Zinc finger, CCCH-type
SMARTSM003560.001615691593IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-415711591IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1594 aa     Download sequence    Send to blast
MEQQQQQHQV SRIWKGEGEQ SQRGGVFDSL LRGVGAEDMT IDQCEAIREM DHSQLIGAPV  60
AVSSDVVAKV DSVAIVDVRV GNAVAAVPEI STVKRRRGRP PRNQGKVAPP PPKAMEEEDV  120
CFICFDGGSL VLCDRRGCPK AYHPACIKRD DAFFQSKAKW NCGWHICSSC ERASHFMCYT  180
CTYSLCKGCT KDAAYLCVRG NKGFCRQCMK MIKLIEKVPL ENGEQVQVDF DDKGSWEYLF  240
KVYWVCLKEG LSLTVDEILK AKNPWNVDEL PKAKSPWKVP AAVDPVSESS GELYYGHDEK  300
ATSSGNSYGS LETNYSKRRK YDVEPKNLTD EKPVGTEKSS VSKVAPLPEG IQWATKELLE  360
FVAHVRNGDT SFLSQLDVQA LLLDYIKRNN LSDSRRKSQI LCDTRLINLF GKTRVGHIEM  420
LKILKNHFLV KENPPCDESV RVDIAAAAAA GSCADPYVGI GNGIVVNNDR RRKTRKRMDE  480
KVTQFNPNPD EYAAIDVHNI NLLYLKRSSM ENLVIDADTF HEKVVGSFVR IRIPCGDHRQ  540
DVHRLVQVVG TGKAAQSYKL GIRITDIMLQ IMNLDKKEVV SIDGISDQDF SEEECKRLRL  600
SVGSGLIKLM KVGAIQEKAK ALHSVKVTDF LEAEIAQLTH LRDRASEKRQ RKKYPYIQWL  660
ECTEKLEILR SVEERQRRLH EVPIVHSDPN IGFRSSSHGQ NSPAAVPTEP ISAAAPVMHY  720
PPPTTGVVPL NDEERLWHYR DPFGTVQGPF PMMQLRRWST SGLFPLDLRV WMMNGKEEES  780
ILLTDALLGL FRREPLLPAN NHMPPLEVTT DCSDKDKMWN RVLSQDKSTN QMPPQEVITD  840
CDDKDKNLNL RQDTSKNHMP PQEVITDCSD KDKKWNPASS QDTSKNYIPP QEVINDCSDK  900
EKKWNSSSSQ DTSTNHMDKN KDDQNGPSER NDLSSMDVGN DEVRSNELGS RSSRLTMLVD  960
LVIGSNELDQ KSEQPCELSK NVKSGVSQSQ ICDSVASPSA SAKERDAESL QVAQVVEEEN  1020
RSTSVNDVKR SPKEQTVVEE GDEKKGKSEG CSSQSSGQSW HSTHMNISYG WDLNSTFPSM  1080
VNSNGTVKNE QEVDFSEIGT SLPKQSNEDS KGPSVGESKH SVSCNVPIID AGPSWSTTSS  1140
LVAGVRLPDV AAEWTRYSSP AKPSVEDWGS NLVSASSLRP PNGSSDHGTI PTSGAGELRH  1200
TSPSIDAGGW QAMVSEPNEF SLVDESVSDL LAEVEAMESL GGLPSPTSKL SCVGDLMHVS  1260
DNDCFSPVED FSPAAVHGRS DALSSTGDIQ MPGQISVAEE QLGLSIMPSQ PIVPRDSLEK  1320
TQKPPQLTVT EPFHISLMLS QPLVTSKPQS ATVPTPHHRQ SQAEGSFGIT RTDVLDSQKS  1380
SSNGHSSNEV ERERPHSVKS NRWEGSSETQ NHHQSSSKQP KLELDIHLPF GSNTSRHEVE  1440
AKSDVQFHAP ASVDLRLGNS RGQRSILGIA PGIAAQGNTS IHSGSTGHSS VKKQASQYPA  1500
ATAAGIPSLL GSPRHGGDKH SGSRDHRSHH QSSRDSGYGR ERSTWNSSSR QSSHGGHGGG  1560
GSFKAAPKGP RVCKFYENGY CKKGASCSFW HPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A8e-131121871081Histone-lysine N-methyltransferase NSD3
4gnd_C8e-131121871081Histone-lysine N-methyltransferase NSD3
4gne_A8e-131121871081Histone-lysine N-methyltransferase NSD3
4gnf_A8e-131121871081Histone-lysine N-methyltransferase NSD3
4gng_A8e-131121871081Histone-lysine N-methyltransferase NSD3
4gng_D8e-131121871081Histone-lysine N-methyltransferase NSD3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014271
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100142710.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding