PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014279
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 732aa    MW: 81421.8 Da    PI: 8.4055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014279genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.8e-056186551254
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ ++++ L++l+ +      +K + a++L++A+ YI+ L
  Lus10014279 618 RKEKLGDRIASLQRLVAPY-----GKTDTASVLTEAIGYIQFL 655
                  7778899*********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF130412.3E-8121168IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.501122156IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.0E-4123152IPR011990Tetratricopeptide-like helical domain
TIGRFAMsTIGR007563.5E-4125156IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.141157192IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.635193227IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.4E-4198225IPR002885Pentatricopeptide repeat
PfamPF015351.5E-4198224IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.102.0E-4221284IPR011990Tetratricopeptide-like helical domain
PfamPF015350.21226250IPR002885Pentatricopeptide repeat
PfamPF130416.6E-8254302IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.192255289IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.1E-5257290IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.24290324IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.695326360IPR002885Pentatricopeptide repeat
PfamPF015350.059331358IPR002885Pentatricopeptide repeat
PROSITE profilePS5088811.439606655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-10616669IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-4616660No hitNo description
Gene3DG3DSA:4.10.280.102.7E-7616663IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MVSLSARSIF KPLEKCIVNL GSMIFNPEQT AVLHRESPKQ TVVFAPFSHL QQQRNRLEFE  60
LVSALDSCTS ILQVKQVHAH ILGKGINQSS YVITKLLRTL SKLDVTVGCY PLAIFAQVQY  120
PNPFLYTAII RAYSTRERLS EAVGLYRLMR RDRVIPVSFT FTALFKGCSG AKNASLGEQL  180
HAQTILIGGF DSDLHVGNSI IDAYLKCGRL VCARKVFDEM PEKDVISYTG LTVAYTKRGD  240
MDSASELFDR SPAKDMVAWT AMVTGFSQNA KPKEAIETFE RMQKAGVETD KVTLIGIVSA  300
CAQLGAAKYA DWVHDIARSS EFGTNHVILG SALVDMFSKC GDVDSAHEVF QGIQEKNVFS  360
YTSMILGSSN SSNYQNYHQL IDQSSKDHDY SWPAQPPPVP SPSLRSLMNL ESFDDSNDQL  420
LLSKIKDEMP DAFPKLRDMQ TIYNSNRNNY FSSTTFPPYY AAAAGGSPRD QDSSCDSRTY  480
HVMPSVNVLT SNLSSSTLGS SSLDLNLRAV DHHFNHATPS HSHSTTTSRN CSIQLQQMMS  540
HHHHFMGDSP SHSSNNNNKT VGIEAAVSLG IKKISKRPMI SSFSDHQSSS SKNNTQVDHH  600
KKKRSTSSRP SCPPLKVRKE KLGDRIASLQ RLVAPYGKTD TASVLTEAIG YIQFLHDQVQ  660
TLSVPYMRST SNNQPTRPFM LRSSRDEEDH QYHQHQHRHE HESQKEDLKS RGLCLVPQSV  720
ASYLNGYDLG I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D4e-38583922327PLS9-PPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014279
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100142790.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.13e-32bHLH family protein