PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014342
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 188aa    MW: 22077.3 Da    PI: 10.3638
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014342genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.67.1e-21241642127
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka.eek..ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    G+rF+Ptd++l+ ++L +k+++ + +++e+ ikevd y+vePwdL ++++  ++k  ++yf++k ++k+++  ++  a  +++W+     ke+ ++
  Lus10014342  24 HSGIRFRPTDKQLIGQFLIPKIRRGDaVDEEDPIKEVDAYSVEPWDLWTRFSDdDDKgaDLYFYTKLKRKSSKVIERVIAGGKATWHGETAGKEIQVN 121
                  67********************99886777788**************85554423334477********9887555555666889**88777777776 PP

          NAM  96 ....kgelvglkktLvfy..........kgrapkgektdWvmheyr 127
                      +     +kk+L              ++  ++e+ +W+m ey+
  Lus10014342 122 yirkD---QKTKKVLSTCrlkfeirrfsYKNPGHPEHRRWIMLEYK 164
                  64441...444444443322222444434667778899*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-2112179IPR003441NAC domain
PROSITE profilePS5100518.55223187IPR003441NAC domain
PfamPF023652.7E-1125164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDHDSSQIAL MERRKAYFAS LNLHSGIRFR PTDKQLIGQF LIPKIRRGDA VDEEDPIKEV  60
DAYSVEPWDL WTRFSDDDDK GADLYFYTKL KRKSSKVIER VIAGGKATWH GETAGKEIQV  120
NYIRKDQKTK KVLSTCRLKF EIRRFSYKNP GHPEHRRWIM LEYKGVSAAD WVIFRLRKTP  180
EKTQRSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014342
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100143421e-136(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.14e-09NAC domain containing protein 52