PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014350
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 234aa    MW: 24973.5 Da    PI: 7.9047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014350genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000186587123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C + F ++  L  H++ H
  Lus10014350 65 FSCNYCQRKFYSSQALGGHQNAH 87
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.57E-66292No hitNo description
PROSITE profilePS5015711.4276592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDTKQYHDEE DSHDPPLNLI DSLDVGSSSS SSSSSDMITM MTAAASAHPN NPTPPAGDQE  60
PTRVFSCNYC QRKFYSSQAL GGHQNAHKRE RTIAKRAGSG GAHHFMRASS SFHFSSSISS  120
LPLHGSPLGI QAHSLIHKPR RQQPNIISIA DHQRPAVGRL AAEYNFHLGS STTTSSGRFD  180
AGWRLSPAAD EIMMMHHGGG GGFWWSGGGS GGDGGGVRSK QDDLHKLDLS LKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812143.17e-48PREDICTED: zinc finger protein 1
TrEMBLA0A2I4DYC72e-46A0A2I4DYC7_JUGRE; zinc finger protein 1
STRINGLus100143501e-171(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-20zinc-finger protein 1