PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014653
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 989aa    MW: 109084 Da    PI: 9.0357
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014653genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52.1e-10555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT++E+  l+ +v ++G g W+tI +          R+  ++k++w++
      Lus10014653  5 KQKWTADEEAALKAGVIKHGAGKWRTILKDPEysgilYLRSNVDLKDKWRN 55
                     79****************************99999**88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.432161IPR017930Myb domain
SuperFamilySSF466898.97E-15273IPR009057Homeodomain-like
SMARTSM007173.0E-6459IPR001005SANT/Myb domain
PfamPF002497.3E-7555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-11556IPR009057Homeodomain-like
CDDcd116606.85E-17656No hitNo description
PROSITE profilePS513755.503146180IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.95183213IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.4E-4185234IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.594216251IPR002885Pentatricopeptide repeat
PfamPF015351.3220249IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.235252286IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.372287321IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.8E-4290314IPR002885Pentatricopeptide repeat
PfamPF015356.8E-4290316IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.563349379IPR002885Pentatricopeptide repeat
PfamPF015350.011353377IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.454419449IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.4E-4422482IPR011990Tetratricopeptide-like helical domain
PfamPF130412.5E-8450496IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.131450480IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.3E-4452478IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.892484519IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.193520554IPR002885Pentatricopeptide repeat
PfamPF015350.76524547IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.4E-4550606IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.875586620IPR002885Pentatricopeptide repeat
PfamPF144321.5E-10623708IPR032867DYW domain
SMARTSM005261.7E-9721801IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150420.881733806IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467859.8E-14741814IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-13742806IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.5E-7744799IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 989 aa     Download sequence    Send to blast
MGAPKQKWTA DEEAALKAGV IKHGAGKWRT ILKDPEYSGI LYLRSNVDLK DKWRNMSVMA  60
HGWTSREKSK LVTKRVHNVL KQEESPVTTG NNVKSDEDVV DIRPPEAAVP LMQIPAPIRS  120
AIRSALYRGS MFGRSPPMKC VSQLFPPSHL RSLLRSCARQ SSLSAGKQLH AVILTSGLRG  180
SSNSFLMNAL LHLYSSCGVL NYARRLFNQI PHSHKDTADW TSLLSCLSQN EKNPFESYSL  240
FGEMRRKNVI VDDVVLLCML GLCARVGDFK MGTQLHGCMV KMGFRHSVKT CNAMMNMHVK  300
CGLLVDARRI FCEMNEPNVV SWSILLEGVI KWEGVQKGME LFDAMPERNE VGWTIMIAGC  360
VESGFIKQGY KLLNEMVFLS SFRLNYVSLC SILSASAQSG DVAIGRWVHV FALKEGDLNF  420
MVGTALVDMY AKCGRIKMAI KVFDNLPRRN VVTWNAMLGG LAMHGKGNTV LELFNKMFKE  480
VSPDDLTFIA VLSACSHAGL VDQGRKYFLN LQSEYGIIPK IDHYACMVDL LGRAGHLEEA  540
ELLIGNMPMP PNEVVLGSLL GSCNTHGKLK LGEKILQDLA EMDPHNTEYH ILLSNIYALS  600
GRLKQANSLR DGLASRGIRK IPGISSIHVG GHIHQFTAGD KSHARTSEIY HTLDGMVIRL  660
RLAGYVPHTA SQVFSGSDGS NNIEEKEQAL LLHSEKLAFC FGLISTRPVT VQRSALQYVT  720
TESHSSSSKF SEGGVEWNQI WLDNLIMEAI TTLMEPDGSN KTAIASYIEE QYWPPQDFKR  780
LLSEKLKHLT SCGKLIKVKR KYRIAATPFA NRKRSACILL QDGRPRAFET AVREDLKMPT  840
KAQVDVEVSK MRRLSAQAAE AVAARAVAEA DAAIAEADEA ARDAEAAEAD AEAAVAYAEA  900
VMKTTKGRNN AKTVPAKLGI NLRLIEGLID RKRTEWCSPA VCSVAGCTMT IVAGCTTILI  960
ACHNNRSEDG ITTKRNTTTV KFHSKPPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D4e-5115261615323PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014653
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084745.10.0pentatricopeptide repeat-containing protein At5g15340, mitochondrial
SwissprotQ9LXE80.0PP386_ARATH; Pentatricopeptide repeat-containing protein At5g15340, mitochondrial
TrEMBLA0A067JT920.0A0A067JT92_JATCU; Uncharacterized protein
STRINGLus100146530.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-45telomere repeat binding factor 1
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]