PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014726
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 181aa    MW: 19671.6 Da    PI: 9.1514
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014726genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-102973554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 h+++Er RR++i +++  L+el+P+ +      K + a++L + v+Y+k L
  Lus10014726 29 HSIAERLRREKIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 73
                 99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.70E-112278No hitNo description
SuperFamilySSF474591.23E-152283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.1322473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-152683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-72973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-113079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MPSSVPAAPQ PPAMRPRVRA RRGQATDPHS IAERLRREKI AERIRALQEL VPSVNKTDRA  60
AMLDEIVDYV KFLRLQVKVL SMSRLGGAGA VAPLVTDIPL SSVEDENGEG GRNQPAWEKW  120
SNDGTEKQVA KLMEENVGAA MQFLQSKALC IMPISLASAI YHTQSQDPPS IVKPEANPPS  180
*
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014726
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898025.11e-117transcription factor UNE12 isoform X2
SwissprotO227683e-94UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2I4DYZ21e-113A0A2I4DYZ2_JUGRE; transcription factor UNE12-like
STRINGLus100027201e-127(Linum usitatissimum)
STRINGLus100147261e-128(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112053239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-86bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]