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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Lus10014786 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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| Family | GRAS | ||||||||
| Protein Properties | Length: 475aa MW: 52667.4 Da PI: 6.4572 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 223.4 | 1.1e-68 | 151 | 424 | 1 | 273 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlt 97
lv+lL++cAeav+ +d+ a+alL++l++ a g+++qR+a++f+++L++rl+ + + + ++p ++ s+e+ al+l +e +P ++f+h++
Lus10014786 151 LVQLLIACAEAVACRDKPHASALLTELRTKALVLGSSFQRVASCFVQGLSERLSLvQPLGAVGFVAPIIMDRAVSDEKEEALSLVYENCPHIQFGHFV 248
689***************************************************9444455666677778778899999******************* PP
GRAS 98 aNqaIleavegeervHiiDfdis....qGlQWpaLlqaLa.sRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrle 187
aN+ I+ea+ege+ vHi+D++++ +G QW L+++La +R+ +++ +lR+Tgvg s ++ +++ge L+++A+e ++++ef+v v+++le
Lus10014786 249 ANSSIMEALEGESFVHILDLGMTlglaHGHQWRGLIESLAnNRAgeHQSVRLRVTGVGT----SVKRFSTIGEELKEYAKEYgNMEMEFSV-VESNLE 341
*******************98652333889**********666654445699*******....9****************98469*****9.79**** PP
GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
+l+++++++++gE+l+Vn++lqlh +++es + +vL+++++lsPkv+v++eq+++hn++ Fl rf+eal+yy+a+fd+++a
Lus10014786 342 NLKPQDIKTHEGEVLVVNSILQLHCVVKESRGALN---SVLQMINNLSPKVMVLMEQDSSHNGPFFLGRFMEALHYYAAIFDAMDA 424
***************************88877777...8********************************************986 PP
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| 2 | GRAS | 31.6 | 2.1e-10 | 430 | 471 | 334 | 374 |
GRAS 334 akqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
qak l k k +gy+v ee+g+lvlgWk+rp+vsvS+W+
Lus10014786 430 LRQAKQWLVKKKvTQGYTVVEEKGCLVLGWKSRPMVSVSCWK 471
67999988888889***************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 43.046 | 125 | 474 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 3.7E-66 | 151 | 424 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 7.2E-8 | 430 | 471 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 475 aa Download sequence Send to blast |
MGPGLLCNYS DESHDRVKNS DMSLIEMAFY PYQYLPILEN SYASEFIIPM LGNDDADADG 60 SRRHKRIKRN NSVPASIGSN IDKNGGSMMM MMSTSISPGS MMKTLPRLHF RDHIWTYTQR 120 FRAAEAIEEA AKSMDINNGE EDGGSSDGMR LVQLLIACAE AVACRDKPHA SALLTELRTK 180 ALVLGSSFQR VASCFVQGLS ERLSLVQPLG AVGFVAPIIM DRAVSDEKEE ALSLVYENCP 240 HIQFGHFVAN SSIMEALEGE SFVHILDLGM TLGLAHGHQW RGLIESLANN RAGEHQSVRL 300 RVTGVGTSVK RFSTIGEELK EYAKEYGNME MEFSVVESNL ENLKPQDIKT HEGEVLVVNS 360 ILQLHCVVKE SRGALNSVLQ MINNLSPKVM VLMEQDSSHN GPFFLGRFME ALHYYAAIFD 420 AMDAPPMKML RQAKQWLVKK KVTQGYTVVE EKGCLVLGWK SRPMVSVSCW KSST* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3h_A | 3e-36 | 158 | 424 | 25 | 278 | Protein SCARECROW |
| 5b3h_D | 3e-36 | 158 | 424 | 25 | 278 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Lus10014786 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002322227.1 | 0.0 | DELLA protein RGL1 | ||||
| TrEMBL | B9IF61 | 0.0 | B9IF61_POPTR; Uncharacterized protein | ||||
| STRING | Lus10014786 | 0.0 | (Linum usitatissimum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8730 | 29 | 45 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G66350.1 | 6e-54 | RGA-like 1 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Lus10014786 |




