PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014786
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 475aa    MW: 52667.4 Da    PI: 6.4572
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014786genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS223.41.1e-681514241273
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  lv+lL++cAeav+ +d+  a+alL++l++ a   g+++qR+a++f+++L++rl+  +  + +  ++p   ++  s+e+  al+l +e +P ++f+h++
  Lus10014786 151 LVQLLIACAEAVACRDKPHASALLTELRTKALVLGSSFQRVASCFVQGLSERLSLvQPLGAVGFVAPIIMDRAVSDEKEEALSLVYENCPHIQFGHFV 248
                  689***************************************************9444455666677778778899999******************* PP

         GRAS  98 aNqaIleavegeervHiiDfdis....qGlQWpaLlqaLa.sRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrle 187
                  aN+ I+ea+ege+ vHi+D++++    +G QW  L+++La +R+  +++ +lR+Tgvg     s ++ +++ge L+++A+e  ++++ef+v v+++le
  Lus10014786 249 ANSSIMEALEGESFVHILDLGMTlglaHGHQWRGLIESLAnNRAgeHQSVRLRVTGVGT----SVKRFSTIGEELKEYAKEYgNMEMEFSV-VESNLE 341
                  *******************98652333889**********666654445699*******....9****************98469*****9.79**** PP

         GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                  +l+++++++++gE+l+Vn++lqlh +++es    +   +vL+++++lsPkv+v++eq+++hn++ Fl rf+eal+yy+a+fd+++a
  Lus10014786 342 NLKPQDIKTHEGEVLVVNSILQLHCVVKESRGALN---SVLQMINNLSPKVMVLMEQDSSHNGPFFLGRFMEALHYYAAIFDAMDA 424
                  ***************************88877777...8********************************************986 PP

2GRAS31.62.1e-10430471334374
         GRAS 334 akqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    qak  l k k  +gy+v ee+g+lvlgWk+rp+vsvS+W+
  Lus10014786 430 LRQAKQWLVKKKvTQGYTVVEEKGCLVLGWKSRPMVSVSCWK 471
                  67999988888889***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.046125474IPR005202Transcription factor GRAS
PfamPF035143.7E-66151424IPR005202Transcription factor GRAS
PfamPF035147.2E-8430471IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGPGLLCNYS DESHDRVKNS DMSLIEMAFY PYQYLPILEN SYASEFIIPM LGNDDADADG  60
SRRHKRIKRN NSVPASIGSN IDKNGGSMMM MMSTSISPGS MMKTLPRLHF RDHIWTYTQR  120
FRAAEAIEEA AKSMDINNGE EDGGSSDGMR LVQLLIACAE AVACRDKPHA SALLTELRTK  180
ALVLGSSFQR VASCFVQGLS ERLSLVQPLG AVGFVAPIIM DRAVSDEKEE ALSLVYENCP  240
HIQFGHFVAN SSIMEALEGE SFVHILDLGM TLGLAHGHQW RGLIESLANN RAGEHQSVRL  300
RVTGVGTSVK RFSTIGEELK EYAKEYGNME MEFSVVESNL ENLKPQDIKT HEGEVLVVNS  360
ILQLHCVVKE SRGALNSVLQ MINNLSPKVM VLMEQDSSHN GPFFLGRFME ALHYYAAIFD  420
AMDAPPMKML RQAKQWLVKK KVTQGYTVVE EKGCLVLGWK SRPMVSVSCW KSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-3615842425278Protein SCARECROW
5b3h_D3e-3615842425278Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014786
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322227.10.0DELLA protein RGL1
TrEMBLB9IF610.0B9IF61_POPTR; Uncharacterized protein
STRINGLus100147860.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-54RGA-like 1