PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014994
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 308aa    MW: 33510.2 Da    PI: 5.4947
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014994genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.9e-35291192101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+++g+sfvv+d++ fa+++Lpk+Fkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+++ll++i+
   Lus10014994  29 FLTKTYQLVDDSTIDDVISWNDDGSSFVVWDPTIFARDILPKHFKHNNFSSFVRQLNTYGFRKLVPDR---------WEFTNECFRRGERRLLCDIQ 116
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   Lus10014994 117 RRK 119
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3720113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5525118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.84E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-192952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1704.7E-4174204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAPPIPDQTG EAGGGTPQLE SQKSLPTPFL TKTYQLVDDS TIDDVISWND DGSSFVVWDP  60
TIFARDILPK HFKHNNFSSF VRQLNTYGFR KLVPDRWEFT NECFRRGERR LLCDIQRRKL  120
APAPAAAAAA GSQSVSPVAS TQPAKQFLRS PSNSGEEQVG SATSTSPSRF GTAAEQLLDE  180
NERLRRENAQ LKKELAEMKS LCNNIFSLVS SYSSACGNNT HPPAATAMLD LMPPAKEEGT  240
SSSGARIFGV SIGEKKRGRE EGGGEDEEST ELQLQPPGSE EVVKSEPAES TTPSMKQCHR  300
SNQRACN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-242911829129Heat shock factor protein 1
5d5v_B1e-242911829129Heat shock factor protein 1
5d5v_D1e-242911829129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014994
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313865.11e-115heat stress transcription factor B-2a-like
TrEMBLA0A1U8JE571e-114A0A1U8JE57_GOSHI; heat stress transcription factor B-2a-like
STRINGLus100149940.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-82heat shock transcription factor B2A