PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014997
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 690aa    MW: 75923.8 Da    PI: 8.662
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014997genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.44.4e-17963256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 rk +++t+ q++eLe++F ++++p+ ++  eL+kklg++ +qVk+WFqNrR+ +k
  Lus10014997  9 RKFHRHTQLQINELESVFLECSHPNDTKYNELSKKLGMDIQQVKYWFQNRRTLKK 63
                 555789*********************************************9776 PP

2START123.72.4e-391984243206
                  HHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
        START   3 aeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                  a  a++el+++a+ +ep+Wvk   + + + evl  +e ++               ea ras +v m+  +lve l+d++ +W+e ++    k +t++v
  Lus10014997 198 AVLAMDELMTMACTDEPLWVKKIdDRSHSREVLNLEEYGRIaapsllrkpngLAREATRASDIVVMDGSTLVELLMDVN-RWTEAFTgmvgKGATIDV 294
                  55689******************955666666666655555666677999999**************************.****************** PP

                  ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
        START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe....sssvvRaellpSgiliepksnghskvtwvehvd 171
                  +s g      g+lq+m ae+qa+s + p R + f+R  +++ +  w+++d  +d++++  +    ++s++R   lpSg++ie+++ng skv+wve++ 
  Lus10014997 295 VSHGvngtkdGTLQTMRAEFQAISAMIPiRHSKFLRLFKKQYENIWAVMDLTLDPKRPDGSslstEPSSMR---LPSGCVIEDLGNGCSKVIWVENWL 389
                  *******************************************************9998766777888888...************************ PP

                  --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                  ++++++  l++++v+sg+ +gak+w atlqr+ce+
  Lus10014997 390 YDENSVNPLMQPMVRSGASFGAKRWIATLQRYCES 424
                  *********************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-15359IPR009057Homeodomain-like
SuperFamilySSF466896.53E-16469IPR009057Homeodomain-like
PROSITE profilePS5007114.916565IPR001356Homeobox domain
SMARTSM003894.3E-14669IPR001356Homeobox domain
CDDcd000861.90E-14865No hitNo description
PfamPF000461.2E-14963IPR001356Homeobox domain
PROSITE profilePS5084834.184187427IPR002913START domain
SuperFamilySSF559618.88E-16188424No hitNo description
CDDcd088752.93E-76191423No hitNo description
SMARTSM002341.3E-24196424IPR002913START domain
PfamPF018528.7E-33200424IPR002913START domain
SuperFamilySSF559613.11E-8444665No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MAQQPTKKRK FHRHTQLQIN ELESVFLECS HPNDTKYNEL SKKLGMDIQQ VKYWFQNRRT  60
LKKTQLKRHE NTVFREDNDK IKAENYLLRT HIANPICHDC SGVATTPTTP TISSEQQRLR  120
LENIRLKEEI NRICSLANKE LGRNLFSSPL ASTSTPPIVT PPSFDPTIGQ SNTVGGFDLG  180
VLPNSTTSHS KSMYKEFAVL AMDELMTMAC TDEPLWVKKI DDRSHSREVL NLEEYGRIAA  240
PSLLRKPNGL AREATRASDI VVMDGSTLVE LLMDVNRWTE AFTGMVGKGA TIDVVSHGVN  300
GTKDGTLQTM RAEFQAISAM IPIRHSKFLR LFKKQYENIW AVMDLTLDPK RPDGSSLSTE  360
PSSMRLPSGC VIEDLGNGCS KVIWVENWLY DENSVNPLMQ PMVRSGASFG AKRWIATLQR  420
YCESVAILIA SANLPPHPSI TIAGKKSLLK LSERMINLYC GGISVGSFPL KWETISVNSS  480
DHNLRIAMRK NSIEPGDTLG VSLTASTSLW LPVSRRMLFE FLANGATRSN WDVQANGGTM  540
TELVHLQKTH IHKNSISVLR TSGYGGGNGG SLILQETWND ESSSVLVYAT VDPQSMELVM  600
TGGDSSFVGL LPSGFAIFPD GSDGVDDATG AGTSTGTGIG SGRGCIMTVG LQLLVSTVPM  660
TRVRRKSIET VNSLLSSTIQ RIKNAFHIV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014997
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100149970.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein