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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Lus10014997 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 690aa MW: 75923.8 Da PI: 8.662 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 53.4 | 4.4e-17 | 9 | 63 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk +++t+ q++eLe++F ++++p+ ++ eL+kklg++ +qVk+WFqNrR+ +k
Lus10014997 9 RKFHRHTQLQINELESVFLECSHPNDTKYNELSKKLGMDIQQVKYWFQNRRTLKK 63
555789*********************************************9776 PP
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| 2 | START | 123.7 | 2.4e-39 | 198 | 424 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
START 3 aeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84
a a++el+++a+ +ep+Wvk + + + evl +e ++ ea ras +v m+ +lve l+d++ +W+e ++ k +t++v
Lus10014997 198 AVLAMDELMTMACTDEPLWVKKIdDRSHSREVLNLEEYGRIaapsllrkpngLAREATRASDIVVMDGSTLVELLMDVN-RWTEAFTgmvgKGATIDV 294
55689******************955666666666655555666677999999**************************.****************** PP
ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe....sssvvRaellpSgiliepksnghskvtwvehvd 171
+s g g+lq+m ae+qa+s + p R + f+R +++ + w+++d +d++++ + ++s++R lpSg++ie+++ng skv+wve++
Lus10014997 295 VSHGvngtkdGTLQTMRAEFQAISAMIPiRHSKFLRLFKKQYENIWAVMDLTLDPKRPDGSslstEPSSMR---LPSGCVIEDLGNGCSKVIWVENWL 389
*******************************************************9998766777888888...************************ PP
--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
++++++ l++++v+sg+ +gak+w atlqr+ce+
Lus10014997 390 YDENSVNPLMQPMVRSGASFGAKRWIATLQRYCES 424
*********************************95 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 2.4E-15 | 3 | 59 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 6.53E-16 | 4 | 69 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50071 | 14.916 | 5 | 65 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 4.3E-14 | 6 | 69 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 1.90E-14 | 8 | 65 | No hit | No description |
| Pfam | PF00046 | 1.2E-14 | 9 | 63 | IPR001356 | Homeobox domain |
| PROSITE profile | PS50848 | 34.184 | 187 | 427 | IPR002913 | START domain |
| SuperFamily | SSF55961 | 8.88E-16 | 188 | 424 | No hit | No description |
| CDD | cd08875 | 2.93E-76 | 191 | 423 | No hit | No description |
| SMART | SM00234 | 1.3E-24 | 196 | 424 | IPR002913 | START domain |
| Pfam | PF01852 | 8.7E-33 | 200 | 424 | IPR002913 | START domain |
| SuperFamily | SSF55961 | 3.11E-8 | 444 | 665 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 690 aa Download sequence Send to blast |
MAQQPTKKRK FHRHTQLQIN ELESVFLECS HPNDTKYNEL SKKLGMDIQQ VKYWFQNRRT 60 LKKTQLKRHE NTVFREDNDK IKAENYLLRT HIANPICHDC SGVATTPTTP TISSEQQRLR 120 LENIRLKEEI NRICSLANKE LGRNLFSSPL ASTSTPPIVT PPSFDPTIGQ SNTVGGFDLG 180 VLPNSTTSHS KSMYKEFAVL AMDELMTMAC TDEPLWVKKI DDRSHSREVL NLEEYGRIAA 240 PSLLRKPNGL AREATRASDI VVMDGSTLVE LLMDVNRWTE AFTGMVGKGA TIDVVSHGVN 300 GTKDGTLQTM RAEFQAISAM IPIRHSKFLR LFKKQYENIW AVMDLTLDPK RPDGSSLSTE 360 PSSMRLPSGC VIEDLGNGCS KVIWVENWLY DENSVNPLMQ PMVRSGASFG AKRWIATLQR 420 YCESVAILIA SANLPPHPSI TIAGKKSLLK LSERMINLYC GGISVGSFPL KWETISVNSS 480 DHNLRIAMRK NSIEPGDTLG VSLTASTSLW LPVSRRMLFE FLANGATRSN WDVQANGGTM 540 TELVHLQKTH IHKNSISVLR TSGYGGGNGG SLILQETWND ESSSVLVYAT VDPQSMELVM 600 TGGDSSFVGL LPSGFAIFPD GSDGVDDATG AGTSTGTGIG SGRGCIMTVG LQLLVSTVPM 660 TRVRRKSIET VNSLLSSTIQ RIKNAFHIV* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Lus10014997 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| STRING | Lus10014997 | 0.0 | (Linum usitatissimum) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G00730.1 | 0.0 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Lus10014997 |




