PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015237
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 404aa    MW: 45684.9 Da    PI: 5.9269
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015237genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.93.8e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d++ ++++sws++++sf+v+ + ef++++Lp++Fkh+nf+SF+RQLn+YgF+k + e+         weF+++ F +g+ +l+++i+
   Lus10015237  14 FLAKTYEMVDDPSSDSVVSWSSSNKSFIVWSPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQ---------WEFANEDFVRGQPHLMKNIH 101
                   9**************************************************************99988.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Lus10015237 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.16E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.6E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.0E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.4E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.7E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDETQGGSGS LPPFLAKTYE MVDDPSSDSV VSWSSSNKSF IVWSPPEFSR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKADPE QWEFANEDFV RGQPHLMKNI HRRKPVHSHS MQNVQVQQQG  120
SNNNPLTDAE RRSLKGDIER LRRDKQVLVS ELQRKEQERR GFELQMTALR GKFQDLEKRQ  180
QTISACLTKA LKQPGLPLDL MPKFDRKRRL PRLGCIDDDP MKEDTQMEVS TCHARESTAL  240
SNLERCEQLE SSLTFWENVV NDVRQTAPPF IRQASSMVEM DECTSCADSP TPSILQLNID  300
VHPKSPGIDM NSEPSVPGTG ELSPPKEQTT GTAAGVNDVF WEQLLTENPG SADAQEVQSE  360
RRDSDSRKND NKPSSDHGRN WWNMRSVNGL AGQVGPLTPA ERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-23610312120Heat shock factor protein 1
5d5u_B5e-23710322129Heat shock factor protein 1
5d5v_B5e-23710322129Heat shock factor protein 1
5d5v_D5e-23710322129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015237
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021599108.10.0heat stress transcription factor A-4a isoform X1
RefseqXP_021599109.10.0heat stress transcription factor A-4a isoform X1
SwissprotO494031e-122HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A2C9U5F30.0A0A2C9U5F3_MANES; Uncharacterized protein
STRINGLus100152370.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-115heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]