PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10015282

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Trihelix

Protein Properties

Length: 162aa MW: 18073.2 Da PI: 10.456

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10015282	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.1	1.3e-14	30	120	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L+ea ++ +l+rg+l++++W++v++ + ++ r+ +qCk++ + ++k+yk +k++ + +s++++fd+l+ Lus10015282 30 CWSEEATATLVEAWGYRYLALNRGNLRQKDWKDVADTVnsihgLTKKTYRTDVQCKNRVDTIKKKYKVEKTRVAASNGAITSSWRFFDRLD 120 7***********************************99999899999******************99999899999*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-24	28	122	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MGDLTDSGTT PNPNPNSSST SRPMPIREDC WSEEATATLV EAWGYRYLAL NRGNLRQKDW 60 KDVADTVNSI HGLTKKTYRT DVQCKNRVDT IKKKYKVEKT RVAASNGAIT SSWRFFDRLD 120 SLVGSNFSGA AGSVSDEHHQ RRASPPSLGN LSRLRLRLRC R*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10015282

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022715762.1	2e-65	trihelix transcription factor ASIL1-like isoform X3
Refseq	XP_022715763.1	2e-65	trihelix transcription factor ASIL1-like isoform X3
Swissprot	Q9LJG8	6e-37	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A2P2KXN4	2e-64	A0A2P2KXN4_RHIMU; Uncharacterized protein MANES_17G056000
TrEMBL	A0A2P2KXN5	3e-64	A0A2P2KXN5_RHIMU; Uncharacterized protein MANES_17G056000
STRING	Lus10015282	1e-117	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1887	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-41	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Lus10015282