PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015296
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 184aa    MW: 20030.1 Da    PI: 10.9865
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015296genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.12.8e-1064922855
          AP2 28 r.krfslgkfgtaeeAakaaiaarkkleg 55
                 + +r++lg++ taeeAa a+++a+ +++g
  Lus10015296 64 HgARVWLGTYETAEEAALAYDRAAFRMRG 92
                 249************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.46127100IPR001471AP2/ERF domain
SMARTSM003803.1E-1347106IPR001471AP2/ERF domain
CDDcd000182.83E-1861100No hitNo description
Gene3DG3DSA:3.30.730.105.2E-1861100IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-1362101IPR016177DNA-binding domain
PfamPF008475.2E-86292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAEPKKPNSP SPTELKDVGK KNCNNASYSG QKLHYPNPPE GQRATFQRER FSRHGDLPDD  60
ERRHGARVWL GTYETAEEAA LAYDRAAFRM RGSKAVLNFP PELAAGVGIR VAGRKGGLLR  120
GVVVVIVVVA LVMGGVMIGR GRGVVLQAPL QCRRRRRGAA AEQGSVRTGE MVISIFLLMT  180
FEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-17601062369ATERF1
3gcc_A8e-17601062369ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100152961e-131(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.11e-07ERF family protein