PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015312
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 238aa    MW: 26518.5 Da    PI: 5.6661
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015312genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.39.8e-13341727127
          NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykveP..wdLpk....kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                  F+Pt+  l  e L++k ++k+++l      +d y+++P  w+L +    +++++++ ++y Fs+++ k a g    r t sg+W  tg++ +v++  k
  Lus10015312  34 FKPTETYLA-ELLERKFASKDTSL------FDFYSYDPedWNL-ApaqeNIHHHDDgNTYVFSPSKAKFA-GGVIIRDTPSGFWMRTGRSATVIEDgK 122
                  899999998.99999999999777......6899999933455.233454444444488*****999876.7789999**************999878 PP

          NAM  97 gelvglkktLvfy...................kgrapkgektdWvmheyr 127
                  ge+ g+k +L f+                   + + ++ ++t W mhe  
  Lus10015312 123 GEQLGCKGVLNFFikkpdgydeqvsggrrvpkRRQLRTEVQTLWQMHEIC 172
                  999**********8888777777766665553334455568999999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.21323191IPR003441NAC domain
SuperFamilySSF1019412.35E-1333191IPR003441NAC domain
PfamPF023652.8E-634171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDQQSSAVKQ GDHHDQSPGS PPINLLKDSL PSGFKPTETY LAELLERKFA SKDTSLFDFY  60
SYDPEDWNLA PAQENIHHHD DGNTYVFSPS KAKFAGGVII RDTPSGFWMR TGRSATVIED  120
GKGEQLGCKG VLNFFIKKPD GYDEQVSGGR RVPKRRQLRT EVQTLWQMHE ICLIPKDNVN  180
PGMALCVAYK TKPVIKKPKK KKKVKTGEDD ASSTGSWTDS DWDTDTDTDT SDSEDET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149156RRVPKRRQ
2150155RVPKRR
3197203PKKKKKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015312
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100153121e-177(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.12e-07vascular related NAC-domain protein 7