PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10015370

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

ZF-HD

Protein Properties

Length: 105aa MW: 11312.5 Da PI: 8.5115

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10015370	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.8	2e-31	32	88	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY eC++NhAa +Gg avDGC+Efm+s+ +++t+ al+CaACgCHRnFHRre+++ Lus10015370 32 AIRYGECQRNHAAIVGGFAVDGCREFMASSLDQATPLALTCAACGCHRNFHRRESQD 88 689************************9999*******************886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.7E-27	33	86	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-20	33	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.9E-26	34	85	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.921	35	85	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MRKRQVVVRR RSSELEGSRN NGREAAGNPG TAIRYGECQR NHAAIVGGFA VDGCREFMAS 60 SLDQATPLAL TCAACGCHRN FHRRESQDED AISHYSSPTS SATN*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269\|PubMed:21455630}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10015370

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU830493	7e-91	EU830493.1 Linum usitatissimum clone LU0022D02 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015583772.1	4e-33	mini zinc finger protein 2
Swissprot	Q9LJW5	5e-28	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	B9T6Z4	9e-32	B9T6Z4_RICCO; Transcription factor, putative
STRING	Lus10015370	1e-71	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1550	34	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	2e-28	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	Lus10015370

Publications ? help Back to Top
Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]