PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015400
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HB-other
Protein Properties Length: 234aa    MW: 25568.2 Da    PI: 6.0408
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015400genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-194499257
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                  kR+  t+ qle+Le+++  + yps+++r++L++klgL++rq ++WF+ rR k++k
  Lus10015400 44 PKRQMKTPFQLETLEKAYSLETYPSEATRTKLSQKLGLSDRQLQMWFCHRRLKDRK 99
                 69****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-1831101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-1833100IPR009057Homeodomain-like
PROSITE profilePS5007116.61740100IPR001356Homeobox domain
SMARTSM003899.2E-1842104IPR001356Homeobox domain
PfamPF000464.6E-174499IPR001356Homeobox domain
CDDcd000862.02E-1645100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDANSEADDH HRDPDPDDDS MAGNKNNVAV SSYSSAAAAA NGKPKRQMKT PFQLETLEKA  60
YSLETYPSEA TRTKLSQKLG LSDRQLQMWF CHRRLKDRKE DKRDGNGMKK PHGKASLMKS  120
SSSPVDDYHQ LKAGSDDDHH QVGSDDESER GSGSSRYVEP SRNNAACFDD GHVPRRYHQS  180
SSTMLSAMKA RAIACVEAQL EEPLKEDGPV LGIEFDPLPP DAFGAAIGTA FLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19299RRLKDRKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811588.17e-58PREDICTED: homeobox-DDT domain protein RLT1 isoform X1
RefseqXP_018811589.16e-58PREDICTED: homeobox-DDT domain protein RLT1 isoform X2
RefseqXP_018811590.17e-58PREDICTED: homeobox-DDT domain protein RLT1 isoform X3
SwissprotF4HY565e-46RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A2I4DWR31e-56A0A2I4DWR3_JUGRE; homeobox-DDT domain protein RLT1 isoform X2
TrEMBLA0A2I4DWR42e-56A0A2I4DWR4_JUGRE; homeobox-DDT domain protein RLT1 isoform X1
TrEMBLA0A2I4DWS72e-56A0A2I4DWS7_JUGRE; homeobox-DDT domain protein RLT1 isoform X3
STRINGLus100154001e-173(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15781611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.12e-39homeobox-1