PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015415
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 251aa    MW: 27753.1 Da    PI: 10.1658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015415genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-202272256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  Lus10015415 22 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 72
                 69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.28E-202281No hitNo description
PROSITE profilePS5103223.8942279IPR001471AP2/ERF domain
PfamPF008475.1E-142271IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-222281IPR016177DNA-binding domain
SMARTSM003805.9E-382285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-322280IPR001471AP2/ERF domain
PRINTSPR003675.3E-112334IPR001471AP2/ERF domain
PRINTSPR003675.3E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAPREKISAA KPNNGGGGSE VHFRGVRKRP WGRYAAEIRD PGKKSRVWLG TFDTAEEAAR  60
AYDAAAREFR GAKAKTNFPH SGELQMTMMM NKNINNNILM NKKAFNSQIS VSAAANNNRS  120
PSQSSTVESS SREPQQQMII ESSPPLDLNL GPVSAIVRFP FQPMSRIHNP HHHVTYYEAM  180
MKNAQYQRMI LDHHQRNQAI FSGGGGVQSD SDSSSVIDLN HNHTDPIHPS PKTMRSLDLD  240
LNLPPPSENV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-212279260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A3e-211580773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015415
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091652.15e-70ethylene-responsive transcription factor 4
TrEMBLA0A2C9U5W19e-59A0A2C9U5W1_MANES; Uncharacterized protein
STRINGLus100154150.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-26erf domain protein 9