PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10015425

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 277aa MW: 29897.8 Da PI: 8.7816

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10015425	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.7	5.4e-38	22	79	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +l+cprCds+ntkfCyynnyslsqPr+fCk+C+ryWt+GG+lrnvPvGgg+rkn+k+ Lus10015425 22 PQLRCPRCDSSNTKFCYYNNYSLSQPRHFCKSCKRYWTRGGTLRNVPVGGGCRKNHKR 79 6789***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	11	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	23	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.152	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048364	Biological Process	root development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MENPISSSSA AAGGQDNNNQ PPQLRCPRCD SSNTKFCYYN NYSLSQPRHF CKSCKRYWTR 60 GGTLRNVPVG GGCRKNHKRP NNSTSAANKR LPLPLPSSSS SATSTLVLES PNHHNNQINN 120 PLLYGLQHYP APEASSHHPH HLVSSFSSNG LGYSGISPSM ATLLASTLNN KFSSSSTSSN 180 GIVKPDHYSA GFEGLQMGIH GGVKAHYQEQ GQDWNINNFG NNQNNLGWGQ VLMNDHHHHH 240 NQVVEGVGSG QEPGYWTGLW SDPGSNNIGP SVTSLI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10015425

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium (PubMed:30626969). Induced by the transcription factor MONOPTEROS (MP) in cells relevant for root initiation, and later in vascular tissues and hypophysis (PubMed:20220754). {ECO:0000269\|PubMed:20220754, ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC083942	2e-34	AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence.
GenBank	AC137698	2e-34	AC137698.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0014A21, from chromosome 3, complete sequence.
GenBank	AP014959	2e-34	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	2e-34	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q84TE9	8e-35	DOF53_ARATH; Dof zinc finger protein DOF5.3
STRING	Lus10015425	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-34	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Lus10015425

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]