PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015619
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CO-like
Protein Properties Length: 420aa    MW: 45602.5 Da    PI: 7.1694
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015619genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.46.1e-0872117342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   ++C+ +e+ ++   C+ +   lC  C l +H+       H++vp+
  Lus10015619  72 VWMCEVCEQAPAAGTCKADAAALCIACDLDIHSAnpvahrHERVPI 117
                  689****************************966899977887876 PP
2CCT67.43.8e-23326368143
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                  R a+++RY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+
  Lus10015619 326 RMARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKR 368
                  889**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.88370117IPR000315B-box-type zinc finger
SMARTSM003363.4E-1270117IPR000315B-box-type zinc finger
PfamPF006435.7E-672117IPR000315B-box-type zinc finger
CDDcd000211.93E-873117No hitNo description
PROSITE profilePS5101716.638326368IPR010402CCT domain
PfamPF062038.8E-18326368IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGTEIEPPFN ATSIAATAAA VGGVWGVVAP PPETATKRRF DGSHAAYICL PYGDEGRRSH  60
HREKQAAGAG RVWMCEVCEQ APAAGTCKAD AAALCIACDL DIHSANPVAH RHERVPIGPF  120
VDASANENRA YESRVYENRA YSASVGGGRE EVDGISWAFP GSGFSQLDQK QEGQQRKDQI  180
FGEMDELLEL EYGGDLLGGR FQPSYSYGGS DGVVPVQSKV NSVLPAPAGA APVVVGHQFL  240
MGSCENGLEL DFSRSKLCSF NYPAQSLSNS VSSSSHDAGV VPDGICSNNN SISEISFSFD  300
HNNNPTLNHH TQVAPPAAKQ QRGLDRMARV MRYREKRKNR KFEKTIRYAS RKAYAETRPR  360
IKGRFAKRCS PSFSENNNSN NEPADHQHHF DEMVLYGSSS SLSFFSNVDG RYGVVPSFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015619
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K9RCM20.0A0A2K9RCM2_MANIN; Constans 5 (Fragment)
STRINGLus100156190.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.16e-45CONSTANS-like 5