PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015651
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRF
Protein Properties Length: 237aa    MW: 26242.2 Da    PI: 9.0382
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015651genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.45.9e-2466108244
          WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                   epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk  +
  Lus10015651  66 LEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKATV 108
                  69*************************************9765 PP
2QLQ63.84.4e-221650135
          QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35
                 s+FTa+Q+q+L++Q+l+yKy+++++P+Pp+Ll ++
  Lus10015651 16 SPFTATQWQELEHQALIYKYMVSGLPIPPQLLSPL 50
                 89******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-111652IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.3E-161750IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.1261752IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166722.86265109IPR014977WRC domain
PfamPF088795.0E-2067106IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MLSTRTTNTN SSSCSSPFTA TQWQELEHQA LIYKYMVSGL PIPPQLLSPL TWGSCFQVGF  60
SKKTDLEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGK NRSRKATVDV SSSSSSCARN  120
VLANVNGVGG INQYGQSALF TDSAANSVSS PCQVHLPDYN RYVHGVKVED NMQQLSSSSS  180
SKGYYCSPQS DLQSFPYPSM RPIISYSHET QKPLHQFFGG TTDHSWLDLA SSSRPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015651
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100156511e-176(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141951017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.16e-42growth-regulating factor 5