PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10015726

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

M-type_MADS

Protein Properties

Length: 200aa MW: 22012.1 Da PI: 10.039

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10015726	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.4	2.1e-24	23	68	1	46
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 k+ien+ nr+vtfskR+ g++KKA ELS+LC+a+vaviifs + k+ Lus10015726 23 KKIENDANRYVTFSKRKSGLFKKATELSTLCGAQVAVIIFSGHHKV 68 68***************************************88776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.749	15	75	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.7E-33	15	74	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.92E-28	16	88	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.96E-34	16	87	No hit	No description
PRINTS	PR00404	1.5E-20	17	37	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.6E-24	24	70	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-20	37	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-20	52	73	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MTSGAAGKKA KKPSKGRQKI EIKKIENDAN RYVTFSKRKS GLFKKATELS TLCGAQVAVI 60 IFSGHHKVFS CGRPDVDSVL RRYQLHSPNL TLNPNNNDRR GNAVNYSDCK ASFGIDNVIM 120 ASRESVQKQE YVKAVKMLEE GKRHVAAQAG LGDPTTVSGG FWWEDWAVDA MEEKDQVQSC 180 KESLMELKEK VSARLGSMG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	2e-17	16	83	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	2e-17	16	83	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	2e-17	16	83	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	2e-17	16	83	1	68	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	2e-17	16	83	1	68	Myocyte-specific enhancer factor 2A
3kov_B	2e-17	16	83	1	68	Myocyte-specific enhancer factor 2A
3kov_I	2e-17	16	83	1	68	Myocyte-specific enhancer factor 2A
3kov_J	2e-17	16	83	1	68	Myocyte-specific enhancer factor 2A
3mu6_A	1e-17	16	83	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	1e-17	16	83	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	1e-17	16	83	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	1e-17	16	83	1	68	Myocyte-specific enhancer factor 2A
3p57_A	2e-17	16	83	1	68	Myocyte-specific enhancer factor 2A
3p57_B	2e-17	16	83	1	68	Myocyte-specific enhancer factor 2A
3p57_C	2e-17	16	83	1	68	Myocyte-specific enhancer factor 2A
3p57_D	2e-17	16	83	1	68	Myocyte-specific enhancer factor 2A
3p57_I	2e-17	16	83	1	68	Myocyte-specific enhancer factor 2A
3p57_J	2e-17	16	83	1	68	Myocyte-specific enhancer factor 2A
5f28_C	2e-17	16	83	2	69	MEF2C
5f28_D	2e-17	16	83	2	69	MEF2C

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10015726

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10015726	1e-148	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-25	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	Lus10015726