PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015734
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 378aa    MW: 41866.6 Da    PI: 9.1159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015734genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.8e-15188233555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+++L+
  Lus10015734 188 HNQSERRRRDRINQKMKALQKLVPNA-----NKTDKASMLDEVIDYLRQLR 233
                  *************************8.....6*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.6E-18181241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.758183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-19186260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-15188237No hitNo description
PfamPF000107.6E-13188232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-16189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGWVWGGSWI NYEVAELTWE KGQPSLNGLG SSLHPKQTWT STRPNNDTLE SIVHQAASLK  60
PPTSPPSNPT SDCKWRPVAA SSRKRSRTES NVANDGKRIW DSNRSNDDEN VVGYRVGNGG  120
AGRAAASSRE SGGTVMPWPL PATFQNKPDD CDDNEEEEEK ESGKTETTTS ARSLSSIFSR  180
RSRASDVHNQ SERRRRDRIN QKMKALQKLV PNANKTDKAS MLDEVIDYLR QLRAQVEMMN  240
NIRSMKPPQP SQMMMMVPNI DQMPLFGLGM GMNPLASSSS SIHMRHLLPP SAFMTNTTPP  300
FLLHHSTANM NYNNTCKSSG EANLSSLNAA QSSMDVELYL KNMAAMDQQQ QQEVHNRSTN  360
AIGAASHHSS HTIQRDK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191196ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015734
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100157340.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.16e-23bHLH family protein