PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015743
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 200aa    MW: 22323.1 Da    PI: 6.0168
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015743genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.51.6e-20311732128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkklelee......vikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gk......rknratk....sgy 82 
                  p G+rF+Ptd+elv++yL +k  g + + ++      +++  d + + P dL + + a+++ewy F++++++ ++ g+        +   +    +g+
  Lus10015743  31 PLGYRFKPTDHELVKHYLVPKSMGLESDSATlgcignTMNASDFFALPPYDLVSPI-AKKEEWYVFIHQANEDTKqGDnddnklTVT---RtvdgEGF 124
                  89********************99995554455555469999**********7444.5679***99998887774233222222333...233459** PP

          NAM  83 Wkatgk.dkevlsk.kgelvglkktLvfykgrapkge.ktdWvmheyrl 128
                  W++  + d +++++ +g   g k  +++y  ++ +g  +t+W ++eyrl
  Lus10015743 125 WESNKSfDLTICDHsSGLPLGFKSRFTYYLSSSTRGIlETEWKLDEYRL 173
                  **87775778887656667**********8877777659********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-2328195IPR003441NAC domain
PROSITE profilePS5100525.62830196IPR003441NAC domain
PfamPF023651.5E-1531173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MMNSSVVSNG GGGRRRLLVS SEETEVAKTF PLGYRFKPTD HELVKHYLVP KSMGLESDSA  60
TLGCIGNTMN ASDFFALPPY DLVSPIAKKE EWYVFIHQAN EDTKQGDNDD NKLTVTRTVD  120
GEGFWESNKS FDLTICDHSS GLPLGFKSRF TYYLSSSTRG ILETEWKLDE YRLFSPPNSK  180
VLSTHGSLIN CTITYRINV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015743
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100157431e-147(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144391218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.13e-12NAC family protein