PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10015760

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

TCP

Protein Properties

Length: 248aa MW: 26604.5 Da PI: 10.1736

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10015760	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.3	9.6e-37	50	151	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 +k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLl+q++p+i+++tgt++++as+ a+ss+s+++ ++s+ Lus10015760 50 PKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLNQSEPSIIAATGTGTIPASALaAAGSSVSNSEMQGSSvsfsagnnwaa 147 6999****************************************************************888655555555554444344544444444 PP TCP 89 ...k 89 + Lus10015760 148 lmnA 151 4440 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.4E-32	54	236	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.706	55	109	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MEQQQQQPKV PNHLDDPHQN SNNPLSAMKD VQITSLVPNS STKKQQSLGP KRSSNKDRHK 60 KVDGRGRRIR MPALCAARIF QLTRELGHKS DGETIQWLLN QSEPSIIAAT GTGTIPASAL 120 AAAGSSVSNS EMQGSSVSFS AGNNWAALMN ANLQIARSNL TAGIWQPTNN TTIHGGGMEF 180 PNINAGLMSF YSSMFSGGSG NISPGLELGL SQDGGLNNLN SQFYQQMAHN QQQQQKEQSS 240 DSRGSRQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10015760

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021632103.1	2e-72	transcription factor TCP20-like
Refseq	XP_021632104.1	2e-72	transcription factor TCP20-like
Refseq	XP_021636341.1	2e-72	transcription factor TCP20-like
Swissprot	Q9LSD5	1e-54	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A251JE22	4e-71	A0A251JE22_MANES; Uncharacterized protein
STRING	Lus10015760	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3339	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-48	TCP family protein

Link Out ? help Back to Top
Phytozome	Lus10015760

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]