PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015888
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 226aa    MW: 25700.5 Da    PI: 6.7787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015888genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013424121
                 EEETTTTEEESSHHHHHHHHH CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHir 21
                 +kC  C k F++  ++++H+ 
  Lus10015888  4 HKCRLCFKFFPNGTDMRSHMI 24
                 79*****************95 PP
2zf-C2H212.20.00057135157123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC  C k+F++   L  H  +H
  Lus10015888 135 YKCRSCEKVFKSYQALGGHRASH 157
                  9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035543424IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001133161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.97E-7133199No hitNo description
PROSITE profilePS5015711.344135162IPR007087Zinc finger, C2H2
SMARTSM003550.14135157IPR015880Zinc finger, C2H2-like
PfamPF139127.5E-10135159IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
SMARTSM003552.2177199IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-8178199IPR007087Zinc finger, C2H2
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEKHKCRLCF KFFPNGTDMR SHMINLSPSS SSSEETHSSS SSGVEKFANL FFFGQNSNES  60
SEWSKDPRKQ VDERQVSSIS DARTNEEDLT FGLMMLSPDR WKSSLEIEID DEEEEEEEEC  120
EKRGKSGYNY NNRKYKCRSC EKVFKSYQAL GGHRASHNKE KLLHHVNIDR RPPPRPQECP  180
YCDRIFSSGQ ALGGHKGSHF IGESANSIRC SKYLGTIDLN LPALS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015888
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012483087.11e-35PREDICTED: zinc finger protein ZAT9-like
SwissprotQ9M2023e-34ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLA0A2P5QYI74e-40A0A2P5QYI7_GOSBA; Uncharacterized protein
STRINGLus100158881e-167(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-33C2H2-like zinc finger protein