PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10015900
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ZF-HD
Protein Properties Length: 193aa    MW: 20838.8 Da    PI: 5.2191
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10015900genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer38.92.1e-126182425
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGC 25
                 vrY+eC+kNhA+ +GghavDGC
  Lus10015900 61 VRYRECQKNHAVGIGGHAVDGC 82
                 89******************** PP
2Homeobox15.43.3e-05130185152
                  TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                  +r+Rt+ft eq e + +l e    + ++ ++++ e+  +++g++ ++ kvW +N +
  Lus10015900 130 KRHRTKFTGEQKEMMRRLSErlgwRIQKHDEAAVEQFCSETGIKRKVLKVWMHNNK 185
                  79*****************9777779999*************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-96182IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-56282IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152313.07963108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.74E-20115190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-31116190IPR009057Homeodomain-like
TIGRFAMsTIGR015654.7E-25129186IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEFDDRQDLE EEEEEEEGDE EEEEEMRPTA PASAPTKNPS SGGWGEAAGS STAAKKSSAP  60
VRYRECQKNH AVGIGGHAVD GCWPLPLPAT AAAGSGGGGG GGNYSREEED VSNPSSSGGG  120
GGMNTSYKKK RHRTKFTGEQ KEMMRRLSER LGWRIQKHDE AAVEQFCSET GIKRKVLKVW  180
MHNNKNTIGK EP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-271301871875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10015900
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018732217.11e-47PREDICTED: zinc-finger homeodomain protein 2 isoform X3
SwissprotQ9SB618e-43ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A2P5PYG72e-45A0A2P5PYG7_GOSBA; Uncharacterized protein
STRINGLus100159001e-139(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-32homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]