PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10016026

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

WOX

Protein Properties

Length: 243aa MW: 27057.5 Da PI: 7.8874

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10016026	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.7	1.1e-19	99	159	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R++++++ql++Le+ F + n++p +e+++e++ +l ++ e+ V++WFqNrRa+ k+ Lus10016026 99 RQRWAPKQSQLQILERIFSEcNSNPGKERIKEITVELskygHVRESSVYNWFQNRRARCKR 159 89***************99************************************97 PP
2	Wus_type_Homeobox	86.8	2.4e-28	98	161	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+++Q++iLe+++++ +P ke+i++it eL++yG++++ V++WFQNr+aR ++kq Lus10016026 98 SRQRWAPKQSQLQILERIFSECNSNPGKERIKEITVELSKYGHVRESSVYNWFQNRRARCKRKQ 161 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.912	95	160	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.5E-16	97	163	IPR009057	Homeodomain-like
SMART	SM00389	3.3E-13	97	164	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-17	98	162	IPR009057	Homeodomain-like
Pfam	PF00046	2.2E-17	99	159	IPR001356	Homeobox domain
CDD	cd00086	1.39E-11	99	161	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MREQQQPERR LQLGNGGGGE EGGTISNNGA ALIGNGLGVK VMTDEQMEML RKQISVYSAI 60 CDRLVQMHTS LALNRHEFPG MLQYGDPLSA CGSSKIPSRQ RWAPKQSQLQ ILERIFSECN 120 SNPGKERIKE ITVELSKYGH VRESSVYNWF QNRRARCKRK QSAPTPRTGN FDVEAAARVV 180 DRAAAAAAKQ KIPEDDDNHN SPLIVDQLYF HTPEIGIDQL IGKLEVCEGF NLYYPEQQNG 240 PS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	160	RRARCKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10016026

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011041212.1	4e-65	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	5e-45	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	B9H5J3	3e-63	B9H5J3_POPTR; Uncharacterized protein
STRING	Lus10016026	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-43	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Lus10016026

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]