PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016180
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 238aa    MW: 27358.5 Da    PI: 7.5845
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016180genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.71.1e-111148339
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E.EEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdae.vavii 39
                 i n++ r+v f +Rr g++KK +EL +LCd+   +vi+
  Lus10016180 11 IANDIARKVCFRNRRLGLIKKVKELTTLCDIPgMCVIY 48
                 89*****************************6366665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.306149IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-10157IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-163105IPR002100Transcription factor, MADS-box
CDDcd002664.06E-18396No hitNo description
PfamPF003191.8E-111150IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSRRKRQVRW IANDIARKVC FRNRRLGLIK KVKELTTLCD IPGMCVIYNP VEESSPHQPL  60
QPPDPPMIWP SREVAVQLME RFLALPALER TKNMTNQLGY LREVVMKADE QQRRESKKIQ  120
NMEFALLMDE VHYGKGLEGL DMEQCRSLAW LIRVKIQEIR RRMEFLGATQ QVEPHHGAQQ  180
GMNQIAAGTM DHPIHIDEDD GSSSLLDGSE ESTVERELAH KKYDGTDAEL NQGMRIK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100161801e-177(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.15e-16AGAMOUS-like 36