PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016411
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NF-YA
Protein Properties Length: 321aa    MW: 34953.9 Da    PI: 10.0849
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016411genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.71.5e-31196252158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQ+++Il+RRq+Rak+e ekk+ +k rkpylheSRh+hA++R+Rg gGrF
  Lus10016411 196 EEPVYVNAKQFHGILRRRQARAKAELEKKV-QKPRKPYLHESRHQHAMKRARGGGGRF 252
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.6E-35194255IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.599195255IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.7E-28197252IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.3E-24198220IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860200220IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.3E-24229252IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MPAKSDDKQQ HIDQSAQTLL NSTIYSQPWW RGIGHSNSTF EESRRKSNSS SSSVEHLKVS  60
DANEAMQRSD GLDNGVSFNK DIQTTVSSQL AASVFSRTDG SGGTAKEVPQ STQISAMGGH  120
PEHNSQMKLV GHSIVSVLSF CGLIWILHLD YALSSYPFSD PQYGGMMATF GPQAMVHPHL  180
YGMQHARMPL PLEMEEEPVY VNAKQFHGIL RRRQARAKAE LEKKVQKPRK PYLHESRHQH  240
AMKRARGGGG RFLSSKKQDG HSMNPGAAAK TAKQSGGKLS APNWFPTNHT GDFHSYHHSS  300
SADGINGGGG RHGNAVSNTA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-23196267274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016411
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8297970.0EU829797.1 Linum usitatissimum clone LU0012B12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020532892.11e-89nuclear transcription factor Y subunit A-1
RefseqXP_020532893.11e-89nuclear transcription factor Y subunit A-1
RefseqXP_020532894.11e-89nuclear transcription factor Y subunit A-1
RefseqXP_020532895.11e-89nuclear transcription factor Y subunit A-1
RefseqXP_020532896.11e-89nuclear transcription factor Y subunit A-1
TrEMBLA0A067LH093e-88A0A067LH09_JATCU; Uncharacterized protein
TrEMBLA0A2I4KKY32e-88A0A2I4KKY3_POPTR; NF-YA family protein
STRINGLus100164110.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-32nuclear factor Y, subunit A1