PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10016634

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

HSF

Protein Properties

Length: 486aa MW: 54059.9 Da PI: 5.6449

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10016634	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.7	4.4e-34	23	113	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d ++++++sws+++nsfvv+d+ efa+++Lp yFkh+nf+SF+RQLn+YgF+k++ e+ we ++++F kg+k+ll++i+ Lus10016634 23 FLIKTYDMVDDTSTDDIVSWSSSNNSFVVWDPPEFARRLLPAYFKHNNFSSFIRQLNTYGFRKSDPER---------WEVSNEEFIKGQKHLLKNIH 110 9************************************************************99988.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Lus10016634 111 RRK 113 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.1E-57	19	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.47E-33	20	112	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.0E-36	20	112	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.9E-18	23	46	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.0E-29	23	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-18	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-18	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MESGIPTSTT AAGGGGGVGT APFLIKTYDM VDDTSTDDIV SWSSSNNSFV VWDPPEFARR 60 LLPAYFKHNN FSSFIRQLNT YGFRKSDPER WEVSNEEFIK GQKHLLKNIH RRKPIHSHSH 120 PQVSSDPERA AFDEEIERLS REKAQLQASL VRCEKERSAK KVQLEDLNHR VDNLVERQVS 180 LLSFLEKSVQ NPAFVQLLID KIEAMDVSAY SKKRRLPQLE ESRPVVIENN ALYCSSRPEF 240 GNVIHQDFSS KLRLELSPAV SDINLFSHST QSSNEDGTSL QGMFSGPEPR DTASLRTPGL 300 LFSAPETLDL SDTGTSCTFK ADSSFPRKVT TSERLGLLSL QPNSDSNDEG DGHISCLLNL 360 SLASCSLQVN KSQSSKVAHE GQEITTSPEL RSNVKDTECD TRTIPRNPSM SIDEKPNIAL 420 APNKNGAPGR VNDVFWEQFL TEQPGSSGNE EASSHYRANP YDEQEDRRSG HGLSRNNRSM 480 EQLSL*

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MESGIPTSTT AAGGGGGVGT APFLIKTYDM VDDTSTDDIV SWSSSNNSFV VWDPPEFARR  60
LLPAYFKHNN FSSFIRQLNT YGFRKSDPER WEVSNEEFIK GQKHLLKNIH RRKPIHSHSH  120
PQVSSDPERA AFDEEIERLS REKAQLQASL VRCEKERSAK KVQLEDLNHR VDNLVERQVS  180
LLSFLEKSVQ NPAFVQLLID KIEAMDVSAY SKKRRLPQLE ESRPVVIENN ALYCSSRPEF  240
GNVIHQDFSS KLRLELSPAV SDINLFSHST QSSNEDGTSL QGMFSGPEPR DTASLRTPGL  300
LFSAPETLDL SDTGTSCTFK ADSSFPRKVT TSERLGLLSL QPNSDSNDEG DGHISCLLNL  360
SLASCSLQVN KSQSSKVAHE GQEITTSPEL RSNVKDTECD TRTIPRNPSM SIDEKPNIAL  420
APNKNGAPGR VNDVFWEQFL TEQPGSSGNE EASSHYRANP YDEQEDRRSG HGLSRNNRSM  480
EQLSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-23	10	112	16	129	Heat shock factor protein 1
5d5v_B	9e-23	10	112	16	129	Heat shock factor protein 1
5d5v_D	9e-23	10	112	16	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10016634

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021290087.1	0.0	heat stress transcription factor A-5
Refseq	XP_021290088.1	0.0	heat stress transcription factor A-5
Refseq	XP_021290089.1	0.0	heat stress transcription factor A-5
Refseq	XP_021290090.1	0.0	heat stress transcription factor A-5
Refseq	XP_021290092.1	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-153	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	B9S9Y4	0.0	B9S9Y4_RICCO; DNA binding protein, putative
STRING	Lus10016634	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-135	HSF family protein

Link Out ? help Back to Top
Phytozome	Lus10016634

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]