PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10016809
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 355aa    MW: 39322.5 Da    PI: 5.5758
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10016809genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF343.9e-11951951
                 HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 r  ++skRr  ++ KA+E++   da+va + fs+ g+l  +ss
  Lus10016809  9 RASSLSKRRSSLIRKANEICFFGDADVAFVAFSPCGRLTKFSS 51
                 7789************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0041152IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-14876IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.414953IPR002100Transcription factor, MADS-box
PfamPF003191.7E-9949IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-51530IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-53051IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MHSSEGGGRA SSLSKRRSSL IRKANEICFF GDADVAFVAF SPCGRLTKFS SKNRIEDILQ  60
KYVDLPAGQR YKIHHLELQI KKAQVDIEIL DANLRDYELH PEQQSHSLPQ LLWCEKNLNR  120
ELQRVLHRKN HLTGSNCSSP YNGRPFMTRR DVLERGNLGS VSSQFSSCGG EELTRPNQNL  180
SYSQLIMKLD PWISPYSSKV RDTIIRDIIN GPDPDHNGTT SGHFGESSSR PVTDQTCPLD  240
VLYNTSPPLD KTIPDCHLSD RPFVPTPMNV TSGDNSNTNV DDGNYGDGPN TKYSAAAPTN  300
PTPEDPPRLH GISSEDEVGN GGFGSRTNQE FGSPDWDGFV LADNLNFDDL DIVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10016809
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100168090.0(Linum usitatissimum)