PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10016873

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

CAMTA

Protein Properties

Length: 902aa MW: 100913 Da PI: 6.8861

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10016873	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	93.9	1.4e-29	34	109	3	77
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg 77 +e ++rwl+++ei+aiL n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkk dgktv+E+he+LK ++ Lus10016873 34 DEaRSRWLRPNEIHAILCNHKYFTIFVKPVNLPKSGTILLFDRKMLRNFRKDGHNWKKKTDGKTVKEAHEHLKLQS 109 4559*********************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	43.11	29	169	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.8E-32	32	128	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.3E-24	35	110	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.6E-6	342	441	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	1.0E-7	352	438	IPR002909	IPT domain
SuperFamily	SSF81296	3.64E-16	353	439	IPR014756	Immunoglobulin E-set
CDD	cd00204	5.14E-15	537	647	No hit	No description
Pfam	PF12796	2.9E-7	538	617	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.6E-16	546	650	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.1E-15	546	649	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.671	555	620	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	12.022	588	620	IPR002110	Ankyrin repeat
SMART	SM00248	3.1E-6	588	617	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	6.65	736	762	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	6.2E-5	740	799	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	39	751	773	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.437	752	779	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.053	754	772	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.091	774	796	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.938	775	799	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.01	777	795	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	23	854	876	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	6.2E-5	854	881	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.62	856	884	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence Send to blast
MASLVATDVP ARLVGSEIHG FHTLQDLDIW NILDEARSRW LRPNEIHAIL CNHKYFTIFV 60 KPVNLPKSGT ILLFDRKMLR NFRKDGHNWK KKTDGKTVKE AHEHLKLQSS PVTPLNSNSS 120 SVSDPSTPWP SAEEFDSGAG NAYPAGEKEF IGDNICKLHW KHFLFSTDPG LFPVKDHQLR 180 LHEINTLEWD DLVAGDPNNL TTFQGDVSSY LVNQNQIAVN GSSSIYQNSL SASNISDGVT 240 SINQIIDPCL NSGTTYSSTA DGTYTQTANL LINSKTQSTD RQAVAHDSTL DYLVDNGLQS 300 QDSFGRWMDD VMAKSADSLD DHLLQPLISS GDGLSTSPAS VQHQYSADHS FVITDVSPSW 360 GFSDETTKVL VTGYFHDQFV HLGNSDLVCV CGDDFVPTEV VQSGVYRCFL PPHSPGLVNL 420 CLSLDGHKPL SQVLNFEYRR PAQHDVVVSK DENSKWEHFH LQMRLACLLL STSKSLNLLS 480 SKISPSNLKE AKKFASRTST ISGNWSFLFK SIEENRVSLA QAKDDMFEIT LKNILNEWLL 540 ERVAEGGKAT EYDTEGLGVI HLCARLGYTW AIYLYSWSGL SLDYRDKHGW TALHWAAYYG 600 RERMVAVLLS AGAKPNLVTD PTAENPGGCT PGDLAEGRGY EGLAAYLSEK ALLSHFKDMS 660 IAGNVCGTLQ SASVEPGTAE NLTEEELYLK DALAAYRTAA DAAGRIQAAF REQSMKLRAK 720 AVEVSSPEDE ARSIVAAMKI QHAFRNYETK KKMAAVVRIQ YRFRTWKMRR EFVNLRRQTI 780 RIQAAFRGFQ VRRQYGKILW SVGVLEKAVL RWRMKRKGLR NLKVEAPESI QEDGQPSDTE 840 EEFFKTGRKH AEERVERAVV TVQSMFRSKK AQAEYRRMKL TYNEASLEYE GLLSPDTDMG 900 K*

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence Send to blast

MASLVATDVP ARLVGSEIHG FHTLQDLDIW NILDEARSRW LRPNEIHAIL CNHKYFTIFV  60
KPVNLPKSGT ILLFDRKMLR NFRKDGHNWK KKTDGKTVKE AHEHLKLQSS PVTPLNSNSS  120
SVSDPSTPWP SAEEFDSGAG NAYPAGEKEF IGDNICKLHW KHFLFSTDPG LFPVKDHQLR  180
LHEINTLEWD DLVAGDPNNL TTFQGDVSSY LVNQNQIAVN GSSSIYQNSL SASNISDGVT  240
SINQIIDPCL NSGTTYSSTA DGTYTQTANL LINSKTQSTD RQAVAHDSTL DYLVDNGLQS  300
QDSFGRWMDD VMAKSADSLD DHLLQPLISS GDGLSTSPAS VQHQYSADHS FVITDVSPSW  360
GFSDETTKVL VTGYFHDQFV HLGNSDLVCV CGDDFVPTEV VQSGVYRCFL PPHSPGLVNL  420
CLSLDGHKPL SQVLNFEYRR PAQHDVVVSK DENSKWEHFH LQMRLACLLL STSKSLNLLS  480
SKISPSNLKE AKKFASRTST ISGNWSFLFK SIEENRVSLA QAKDDMFEIT LKNILNEWLL  540
ERVAEGGKAT EYDTEGLGVI HLCARLGYTW AIYLYSWSGL SLDYRDKHGW TALHWAAYYG  600
RERMVAVLLS AGAKPNLVTD PTAENPGGCT PGDLAEGRGY EGLAAYLSEK ALLSHFKDMS  660
IAGNVCGTLQ SASVEPGTAE NLTEEELYLK DALAAYRTAA DAAGRIQAAF REQSMKLRAK  720
AVEVSSPEDE ARSIVAAMKI QHAFRNYETK KKMAAVVRIQ YRFRTWKMRR EFVNLRRQTI  780
RIQAAFRGFQ VRRQYGKILW SVGVLEKAVL RWRMKRKGLR NLKVEAPESI QEDGQPSDTE  840
EEFFKTGRKH AEERVERAVV TVQSMFRSKK AQAEYRRMKL TYNEASLEYE GLLSPDTDMG  900
K*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10016873

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208139	1e-32	AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021637150.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A3N7FIW0	0.0	A0A3N7FIW0_POPTR; Uncharacterized protein
TrEMBL	B9HWX4	0.0	B9HWX4_POPTR; Uncharacterized protein
STRING	Lus10016873	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Lus10016873

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]