PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10016887

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 266aa MW: 30040.1 Da PI: 4.6576

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10016887	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	25.8	1.3e-08	114	170	4	60
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel 60 Ll+ A+ v++g + +a lL l++++g+p++R+++yf +AL+ ++++++ ++ Lus10016887 114 YLLSSADNVAKGRFDQALGLLRLCDSLSTSQGNPVERVVHYFSKALRVKISKETGTV 170 6999***********************************************965554 PP
2	GRAS	26	1.1e-08	204	263	240	298
GRAS 240 vvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 + + e++ +s+ F+ rf+e l +y alfd l++ + +++ r++vE +l++ i++ v Lus10016887 204 TQAKVEVNWvSSPHFASRFVEMLFHYGALFDGLDTCTGDNERGRAVVESTYLSKLIMKDV 263 5567788888999*****************************************998754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.4E-6	114	170	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-6	204	263	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MGYSHHHLQH DERFFLDSDM HTFDHVEVDD DDQWSLQHGR SLELDDNTDD DDDDSDEWPV 60 LDVSSTHPHL ETEESSTLST EDVIRLAGMR MIHMSSNNHG LSDRDVRNVA LTGYLLSSAD 120 NVAKGRFDQA LGLLRLCDSL STSQGNPVER VVHYFSKALR VKISKETGTV DQYLIISDNH 180 NILRPDDDMS LVHSRRISQH IAATQAKVEV NWVSSPHFAS RFVEMLFHYG ALFDGLDTCT 240 GDNERGRAVV ESTYLSKLIM KDVVE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10016887

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10016887	0.0	(Linum usitatissimum)

Link Out ? help Back to Top
Phytozome	Lus10016887