PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10016895

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 197aa MW: 22351.1 Da PI: 4.3159

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10016895	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	161	1e-49	10	194	84	273
GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179 f + P +s+++a qaI+++v++++r+Hi+Df+i++G QW+ ++qaL + + ++ +l+iT++g +k++leetg+rL +fA+++ ++f+f+ Lus10016895 10 FCDKVPSGPVSQFAAIQAIVDSVAKATRIHIVDFNIKHGEQWIIFMQALVEENwkNPVEHLKITAIGT---MRKDMLEETGQRLIDFAQAMALSFSFK 104 6666788899**************************************999756666*****...67********************* PP GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +++++++ dle ++++v+++E++aV + l ++ s ++ d+v+kl+++l+P v+vv+e e++ ns+ F++r++e l sa+f +le+ Lus10016895 105 MIMVEDFMDLEQDMFEVDSDETVAVLAEYLLTTII----SRVEKVDSVMKLIRGLNPCVMVVTEVESNQNSPVFVNRLVEMLFSASAFFYCLEV 194 *************************999998....44444778*****************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	28.954	1	196	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-47	10	194	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MPTRECFLEF CDKVPSGPVS QFAAIQAIVD SVAKATRIHI VDFNIKHGEQ WIIFMQALVE 60 ENWKNPVEHL KITAIGTMRK DMLEETGQRL IDFAQAMALS FSFKMIMVED FMDLEQDMFE 120 VDSDETVAVL AEYLLTTIIS RVEKVDSVMK LIRGLNPCVM VVTEVESNQN SPVFVNRLVE 180 MLFSASAFFY CLEVCM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-21	6	196	79	273	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10016895

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028947847.1	7e-63	DELLA protein RGL1-like
TrEMBL	B9HWZ7	4e-61	B9HWZ7_POPTR; Uncharacterized protein
STRING	Lus10016895	1e-143	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-30	RGA-like 2

Link Out ? help Back to Top
Phytozome	Lus10016895