PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017152
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 562aa    MW: 62680.8 Da    PI: 9.4001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017152genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13355399554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h + ErrRR++iN++f+ Lr+llP+      +K +Ka++L ++ eY+ksL
  Lus10017152 355 HMISERRRREKINHSFQALRSLLPPH-----PKKDKATVLSRTREYLKSL 399
                  8899*********************7.....69***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.04E-12348399No hitNo description
SuperFamilySSF474592.09E-17349423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.044350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16353421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-11355399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-14356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MESIFSQERE VELPAYLEAL MHYFGSSYIC LWSYHPHPSK ICMNTECSSS LVFLAGFYQQ  60
QRNDHLLLPT TSSSSAAISE VAARRHFNDY IQSAFPPLND RVPGQALKNN QPYVELNEGQ  120
LMRMASILPQ RLFYKRAVFM GCRSGEIELG WSNLTAQQMR IESEMMKLFP EDFSRRRRPL  180
ITADAAMAAN QAGQSSSSSS LRSASPLDNT TTTTTSPTPS ELSSFLINNI TSPAPATITH  240
QSSEVVVDAA ITRALLAVFT SSTLPHPSTN TTITPPPNTS TSTSTSSAFN KFSTTGSLSA  300
SRLPGGVGVQ NRPSMFKRAL AYYRTRRRQQ QQEEKQQLQH MTTTNVGPSS TQLHHMISER  360
RRREKINHSF QALRSLLPPH PKKDKATVLS RTREYLKSLI TQVAQLSQRT RQLESKLVQL  420
NQPAAAVGAA VNIKEPETKA VDIIPTAYQR VDVRLRAVEE TTSSEQHNIV ELQVTLLRDD  480
HRSVSDIVIR VLEFLRQLRH VNLIAIEANT TTSTSHVAPL SSEQTLLHFS RATFTLQIEG  540
DEWDEAAFLE AVRRVVADLA Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358363ERRRRE
2359364RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017152
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100171520.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-43bHLH family protein