PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017320
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 793aa    MW: 84121.3 Da    PI: 9.2096
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017320genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08740788247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      ++W+  E e l d+v+ +G+g Wk+I +  +     R + ++k++w+++
      Lus10017320 740 NPWSRAEVEALEDGVRDYGTGFWKAILKSRQqvfGARNEVDLKDKWRNL 788
                      58********************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-9734790IPR009057Homeodomain-like
PROSITE profilePS5129411.143734792IPR017930Myb domain
SuperFamilySSF466891.14E-11736790IPR009057Homeodomain-like
SMARTSM007177.3E-5738791IPR001005SANT/Myb domain
PfamPF002492.2E-6740788IPR001005SANT/Myb domain
CDDcd116601.73E-14741790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MARPIDPAKY ICEWVMNFVR REPNPASILK AVVVTLNSSL SEFADRRANK VRILKLIQSL  60
IAGGSVSEPI LELLEAIEQI DRENGEETPT SEKMKAAAAY CAVAVQCTVG DGDVKFELSD  120
RIWRVRVLKL EMSGRSHLVT DVLTGFRDAA EGALWVARDL VRFKEVATKI VAANYVRSYL  180
DEAMAAVACS SSEQDTLPGS LAAGIPSTSL VSSPPEVQQA CLDTLRSCVA KLQAVNDPLP  240
NARQVFESLS AEAPSDVERP VGNRDERNVD VLHSSSNASV PEPSAQQGRQ CFQTGQSSKT  300
AAGSPVRHQN LLKPGLITRG LVAHPSVDAS ILDIPAEKDK RKEVIVISNG LESSGQLHDE  360
CFQIDQSNKA AASSSTASST NDLSPAEVVS KSGWMTRKNT AGSTHDSLTA EAVSKSGLMT  420
RKNTAGSTHD SLTAEAVSKS GLMTRKNTAG STHDSLTAEA VSKSGLMTRK NTAGSTHDSL  480
TAEAVSKSGL MTRKNTAGST HDSLTAEAVS KSGLMTRKNT AGSTHDSLTA EAVSKSGLMT  540
RKNTAGSTHD SLTAEAVSKS GLMTRKNTAG STHDSLTAEA VSKSGLMTRK NTAGSTHDSL  600
TAEAVSKSGL MTRKNTAGST HDSLTAEAVS KSGLMTRKNT AGSTHDSSTA EAPQNISHPA  660
SVLGIPAEVG RPTPSSSQKD CHESQQADKN KAVGESSRHP NVPMVDAVCS SADGPSGRKR  720
TRTTVAMPPP LAKKLRRKVN PWSRAEVEAL EDGVRDYGTG FWKAILKSRQ QVFGARNEVD  780
LKDKWRNLHK HQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100173200.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-10MYB_related family protein