PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10017431

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

LBD

Protein Properties

Length: 167aa MW: 18235.7 Da PI: 6.333

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10017431	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.8	3.9e-43	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+C+kdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp e+r da+sslvyeA ar+rdP+yG+vg i+ lq+q++ql+ +lal++ Lus10017431 9 PCASCKLLRRRCTKDCIFAPYFPSHDPHKFAIVHKVFGASNVSKILQDLPMERRADAVSSLVYEAGARVRDPIYGCVGAISYLQSQVSQLQMQLALAQ 106 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Lus10017431 107 AE 108 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.426	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-42	9	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MVTGASNSPC ASCKLLRRRC TKDCIFAPYF PSHDPHKFAI VHKVFGASNV SKILQDLPME 60 RRADAVSSLV YEAGARVRDP IYGCVGAISY LQSQVSQLQM QLALAQAEIL CIAGQQFKAA 120 PDYNLAMIHS DDDNYTTNSE SSLDDVVVAD GNKSLFLLQH GQYIDF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-46	2	110	4	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-46	2	110	4	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10017431

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM436573	2e-46	AM436573.2 Vitis vinifera contig VV79X000523.2, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009604707.1	2e-69	PREDICTED: LOB domain-containing protein 12-like
Refseq	XP_016435041.1	2e-69	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-64	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1S3X5C4	5e-68	A0A1S3X5C4_TOBAC; LOB domain-containing protein 12-like
STRING	Lus10017431	1e-121	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-52	LBD family protein

Link Out ? help Back to Top
Phytozome	Lus10017431

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]