PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017492
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family SRS
Protein Properties Length: 195aa    MW: 21412.8 Da    PI: 8.4288
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017492genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70269.51e-212280462
       DUF702  4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaassk 62
                  + +C+dCGnqak++C + RCR CC+ r ++C+thv stWvp++ rr +q+++  +s++
  Lus10017492 22 AGRRCEDCGNQAKRECRYWRCRRCCNRRKLECQTHVSSTWVPTSLRRLQQATARGSSAT 80
                 4569******************************************9987766554433 PP
2DUF70259.11.7e-188316386154
       DUF702  86 lsstklssaeskkeletsslPeevsseavfrcvrvssv..........dd..geeelaYqtavsigGhvfkGiLydqGlee 154
                   +s++l+++++++ +e  ++P+ev s+a f+c +v+s           dd    +e+aY+t+vsigGh+fkGiLydqG+++
  Lus10017492  83 PTSQQLHHHHNPSDMESDDFPREVTSMATFHCCKVASSmrldsgrnhgDDdrLYDEYAYRTSVSIGGHLFKGILYDQGPQN 163
                  566778889999999999****************9763244333333222123479**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.1E-3323162IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.4E-182665IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.0E-15102161IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MMNGGGETSV GSMRGGGGGG AAGRRCEDCG NQAKRECRYW RCRRCCNRRK LECQTHVSST  60
WVPTSLRRLQ QATARGSSAT HLPTSQQLHH HHNPSDMESD DFPREVTSMA TFHCCKVASS  120
MRLDSGRNHG DDDRLYDEYA YRTSVSIGGH LFKGILYDQG PQNERRQSSA VAGVVVAPPP  180
PFSCTFPLPT LHTE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017492
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008236969.12e-41PREDICTED: protein SHI RELATED SEQUENCE 3
TrEMBLA0A251MV942e-38A0A251MV94_PRUPE; Uncharacterized protein
STRINGLus100174921e-144(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.13e-21Lateral root primordium (LRP) protein-related