PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10017602

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bHLH

Protein Properties

Length: 232aa MW: 26114.6 Da PI: 8.6132

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10017602	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	5.9e-09	94	141	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L+el+P + +k + a +Le+ ++Y+ sLq Lus10017602 94 SHSVAERVRREKINNKLRCLQELVPGC----HKSMGMAVMLEEIINYVYSLQ 141 8***********************9....7889999*******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.49E-10	88	145	No hit	No description
SuperFamily	SSF47459	2.62E-15	88	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.805	90	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-14	90	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-6	94	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-7	96	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MAEFNTQQYW HQRLGTVHHH FPISLDQYSL LPQQQEYHQQ GSASVDADHH IASSSSSPRA 60 NEILGSVRRS RKKKTSGNGE VVHVRARRGQ ATDSHSVAER VRREKINNKL RCLQELVPGC 120 HKSMGMAVML EEIINYVYSL QNQVEVKMLT LAWCGNWKAG QNLEHFLGWM EKLDLDKFLS 180 MELAASAGGA NGYFHNMNLE PQPPIIRSNA QLQVNYCEVT KGSYVQSVGI V*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	73	RRSRKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10017602

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10017602	1e-174	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	5e-35	BR enhanced expression 1

Link Out ? help Back to Top
Phytozome	Lus10017602