PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017793
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GeBP
Protein Properties Length: 241aa    MW: 26700.3 Da    PI: 10.4107
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017793genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57377.81.8e-2454144297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  +f  +w e+DeivlL +l++f +k+g++p+++i ++++ vkks++++v  sql+eK  rLKkKf++  ++    k ++ s++h+qk+f+ls+ iWg
  Lus10017793  54 QFPWIWGESDEIVLLNALLEF-TKRGVDPFKEIGDLHDPVKKSLNIDVYVSQLTEKAARLKKKFREVAAD----KRKRPSNAHEQKCFDLSNEIWG 144
                  57789****************.89******************************************9998....7778899**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.7E-2257144IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEATPSKSST KSPVSHAVSA SRKRGTETET EAKGTKRKKK ESAAKPSNSE KKQQFPWIWG  60
ESDEIVLLNA LLEFTKRGVD PFKEIGDLHD PVKKSLNIDV YVSQLTEKAA RLKKKFREVA  120
ADKRKRPSNA HEQKCFDLSN EIWGMQASSG DIETGNAPKS SNARRSNGKE KGSSRDGGNG  180
NAVTIEGDAE IKDIVINKGL DMVEGSKRAE FEKRGKDVYF AKLKVFIKQT ELVLMMIRRS  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12139RKRGTETETEAKGTKRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017793
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100177931e-175(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.13e-14DNA-binding storekeeper protein-related transcriptional regulator