PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017807
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 221aa    MW: 25314.7 Da    PI: 10.5188
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017807genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM224.4e-076213931111
          NAM  31 eevikevdiykv.ePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykg 111
                   + i+e+d+y    Pw++ p     ++++ + F+k   k+a+ kr +   + g Wk  g+++ v  k  +++++g+kk + f k 
  Lus10017807  62 LNLIHEIDLYGDkTPWEIfP-----GNDRFFTFTKL--KKASAKRVSWNLACGKWKWHGNNRGVDIKdaRERQIGIKKQFSFKKH 139
                  35799***997548***933.....33444445555..55556677777788999999999877666559999*********864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-562139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNGDPFKKVE KAELIDPRSL ARVWRSLRKF QKVMYFRWVF ALIRRRKNSS IITSRVKPKG  60
RLNLIHEIDL YGDKTPWEIF PGNDRFFTFT KLKKASAKRV SWNLACGKWK WHGNNRGVDI  120
KDARERQIGI KKQFSFKKHF SSDPALFDTS SRTLYRDLDD FFRLTEANAT ADLYMTIDQD  180
DSGSAAGTSS QSTSSLVVEG DNTGYKQLSS DPAFFDTSSS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017807
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100178071e-161(Linum usitatissimum)