PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10017819

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

BES1

Protein Properties

Length: 160aa MW: 17869.2 Da PI: 8.7531

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10017819	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	117.7	1.7e-36	71	149	3	81
DUF822 3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaea 81 ++r ++ +E+E++k+RER+RRai+a+i+aGLR++G+y+l++raD+n+V++AL+reAG vv +DGtt++ s+ l+ ++a Lus10017819 71 GRRCRPVEEKERTKLRERHRRAITARILAGLRRHGDYNLRVRADINDVIAALAREAGRVVLPDGTTFPSKSQVLRFKKA 149 689999**************************************************************88877655444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.7E-32	72	143	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MATDMQRLIV TSEEEEIDMD VKEEDNRGKH IDAQLMAGID GGMLSDSCDS QFQYHQQLQE 60 QVSTPGGENI GRRCRPVEEK ERTKLRERHR RAITARILAG LRRHGDYNLR VRADINDVIA 120 ALAREAGRVV LPDGTTFPSK SQVLRFKKAL GGRRALGTA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10017819

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002511857.1	2e-61	beta-amylase 7
Swissprot	O80831	2e-47	BAM7_ARATH; Beta-amylase 7
TrEMBL	B9RDR8	4e-60	B9RDR8_RICCO; Beta-amylase
STRING	Lus10017819	1e-113	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19853	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	2e-47	beta-amylase 7

Link Out ? help Back to Top
Phytozome	Lus10017819

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]