PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10017829
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 173aa    MW: 19395.9 Da    PI: 6.6716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10017829genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.3e-182778155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr++  + +Wv+e+rdp     k++r++lg++ t+e+Aa+a++ a+++++g
  Lus10017829 27 PVYRGVRRRN-NDKWVCELRDP---HsKSRRIWLGTYPTPEMAARAHDVAALSFRG 78
                 68*****887.8*********6...3346************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-132778IPR001471AP2/ERF domain
PROSITE profilePS5103222.3392886IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-292888IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-212888IPR016177DNA-binding domain
SMARTSM003805.9E-242892IPR001471AP2/ERF domain
PRINTSPR003673.7E-72940IPR001471AP2/ERF domain
CDDcd000184.03E-242988No hitNo description
PRINTSPR003673.7E-75268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MAEPLKVAAD YPKKRAGRRV FKETRHPVYR GVRRRNNDKW VCELRDPHSK SRRIWLGTYP  60
TPEMAARAHD VAALSFRGNA ACLNFADSAW RLPLPASSEA EDIRKAAALA AEMFRHKDNT  120
DKEFDWDEEA SFELPGLIAG LAEGLLIPPP VGYAEEADCC FDQSVLWSHD SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-151585371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00104PBMTransfer from AT1G63030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10017829
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029177.11e-65PREDICTED: dehydration-responsive element-binding protein 1E
SwissprotQ9SGJ62e-57DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLA0A251TEJ93e-64A0A251TEJ9_HELAN; Putative DNA-binding domain-containing protein
TrEMBLV9PCD43e-64V9PCD4_POPEU; C-repeat binding factor 2
STRINGLus100178291e-124(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.21e-54ERF family protein